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WormBase Tree Display for Gene: WBGene00003658

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Name Class

WBGene00003658SMapS_parentSequenceH12C20
IdentityVersion1
NameCGC_namenhr-68Person_evidenceWBPerson600
Sequence_nameH12C20.3
Molecular_nameH12C20.3a
H12C20.3a.1
CE18808
H12C20.3b
CE47189
H12C20.3b.1
Other_nameCELE_H12C20.3Accession_evidenceNDBBX284605
Public_namenhr-68
DB_infoDatabaseAceViewgene5M55
WormQTLgeneWBGene00003658
WormFluxgeneWBGene00003658
NDBlocus_tagCELE_H12C20.3
PanthergeneCAEEL|WormBase=WBGene00003658|UniProtKB=Q9XXM8
familyPTHR24083
NCBIgene179589
RefSeqproteinNM_001380769.3
NM_001380770.1
SwissProtUniProtAccQ9XXM8
TrEMBLUniProtAccH8ESE6
UniProt_GCRPUniProtAccQ9XXM8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
AlleleWBVar00146032Inferred_automaticallyFrom strain object: VC1527
WBVar00146074Inferred_automaticallyFrom strain object: VC1603
WBVar00470985
WBVar01499337
WBVar00470986
WBVar01974847
WBVar01499904
WBVar01499905
WBVar01499547
WBVar02151651
WBVar01866005
WBVar01866006
WBVar01049627
WBVar01049628
WBVar01049629
WBVar01049630
WBVar01049631
WBVar01049632
WBVar01049633
WBVar01049634
WBVar01049635
WBVar01049636
WBVar01049637
WBVar01484716
WBVar01049638
WBVar01484717
WBVar01049639
WBVar01049640
WBVar00257208
WBVar01500208
WBVar01500209
WBVar01500212
WBVar01500213
WBVar01499299
WBVar01499316
WBVar01743576
WBVar01743577
StrainWBStrain00036665
WBStrain00036726
RNASeq_FPKM (74)
GO_annotation (17)
Ortholog (26)
Paralog (216)
Structured_descriptionAutomated_descriptionEnables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Part of chromatin. Expressed in head muscle and head neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSH12C20.3a
H12C20.3b
Corresponding_transcriptH12C20.3a.1
H12C20.3b.1
Other_sequenceFD514463.1
FD515477.1
FD514165.1
CBC10258_1
CSC00785_1
Associated_featureWBsf647277
WBsf647278
WBsf661751
WBsf978297
WBsf232522
WBsf232523
WBsf232524
Transcription_factorWBTranscriptionFactor000706
Experimental_infoRNAi_resultWBRNAi00106876Inferred_automaticallyRNAi_primary
WBRNAi00049367Inferred_automaticallyRNAi_primary
WBRNAi00023509Inferred_automaticallyRNAi_primary
WBRNAi00107494Inferred_automaticallyRNAi_primary
WBRNAi00107599Inferred_automaticallyRNAi_primary
WBRNAi00065582Inferred_automaticallyRNAi_primary
WBRNAi00033696Inferred_automaticallyRNAi_primary
WBRNAi00016239Inferred_automaticallyRNAi_primary
WBRNAi00107101Inferred_automaticallyRNAi_primary
WBRNAi00107538Inferred_automaticallyRNAi_primary
WBRNAi00107415Inferred_automaticallyRNAi_primary
Expr_pattern (12)
Drives_constructWBCnstr00012742
WBCnstr00015294
WBCnstr00015295
WBCnstr00015296
WBCnstr00035965
Construct_productWBCnstr00035965
Microarray_results (24)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032425:down_in_alg-1
WBPaper00032425:down_in_zfp-1
WBPaper00032528:L3_enriched
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_embryo_SelectivelyEnriched
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038168:lin-35_downregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00040412:germline-regulated_daf-12_target
WBPaper00041222:unc-120(st364)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_downregulated
WBPaper00045971:tunicamycin_upregulated_RtcB(null)
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049217:TCER-1_downregulated
WBPaper00049334:CE_intestine_enriched
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050096:P.aeruginosa_downregulated
WBPaper00050193:dpy-27(RNAi)_downregulated_L1
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:intestine_enriched
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:female_vs_male_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053814:25C_upregulated_PY79
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:gut-microbiota_downregulated
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
WBPaper00056284:ints-6(t1903)_downregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057196:raga-1(ok386)_downregulated)
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058725:sftb-1(cer39)_downregulated
WBPaper00058948:PA14_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059987:Wounding_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB115_downregulated
WBPaper00061007:M.braciatum_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:DVC_parent
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:T05E12.6_12439-T05E12.6_12396
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062056:lin-15B(n744)_downregulated
WBPaper00062056:met-2(n4256)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_downregulated
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064714:ColdStress_downregulated_ire-1(ok799)
WBPaper00064714:ColdStress_downregulated_N2
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064871:PA14_downregulated_AWA
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065120:body-muscle-transcriptome
WBPaper00065288:mdt-15(tm2182)_downregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:0_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066118:cyclobutrifluram_downregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4489_group_7
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00006465:IV_ethanol_late_repression
WBPaper00025032:cluster_93
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028789:PA14_vs_OP50_downregulated_4hr
WBPaper00028789:PA14_vs_OP50_downregulated_8hr
WBPaper00031850:mdt-15(RNAi)_downregulated
WBPaper00034739:N2lessDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00035479:daf-16(RNAi)_downregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036286:Pattern_C
WBPaper00036464:S.aureus-RN6390_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038462:aging_downregulated
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:Q50_up
WBPaper00041002:HF_11d_0.2mM_Down
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042258:DA1877_downregulated_YoungAdult
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045673:colistin_upregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00053688:E.faecalis_downregulated
WBPaper00053688:E.faecium_downregulated
WBPaper00055435:AuNPs_downregulated
WBPaper00055435:MUA-AuNP-0.5_downregulated
WBPaper00055435:MUA-AuNP-3_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(122_min)
[cgc6390]:Cluster_C
[cgc6390]:herm_soma-enriched
Interaction (15)
Map_infoMapVPosition3.20786Error0.000254
PositivePositive_cloneH12C20Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (17)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene