WormBase Tree Display for Gene: WBGene00001403
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WBGene00001403 | Evidence | Paper_evidence | WBPaper00003411 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | fbl-1 | |||||||
Sequence_name | F56H11.1 | ||||||||
Molecular_name (24) | |||||||||
Other_name | FBLN1 | Accession_evidence | EMBL | AF051401 | |||||
CELE_F56H11.1 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | fbl-1 | ||||||||
DB_info | Database | AceView | gene | 4K309 | |||||
WormQTL | gene | WBGene00001403 | |||||||
WormFlux | gene | WBGene00001403 | |||||||
NDB | locus_tag | CELE_F56H11.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001403|UniProtKB=O77469 | |||||||
family | PTHR24039 | ||||||||
NCBI | gene | 177788 | |||||||
RefSeq | protein | NM_001306946.3 | |||||||
NM_001306950.3 | |||||||||
NM_001028066.6 | |||||||||
NM_001306947.3 | |||||||||
NM_001306948.3 | |||||||||
NM_001028065.4 | |||||||||
NM_069293.6 | |||||||||
NM_001306949.2 | |||||||||
SwissProt | UniProtAcc | O77469 | |||||||
TrEMBL | UniProtAcc | A0A061ADQ1 | |||||||
A0A061AKL1 | |||||||||
A0A061AIV4 | |||||||||
A0A061ACF5 | |||||||||
A0A061ACI3 | |||||||||
UniProt_GCRP | UniProtAcc | O77469 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbl | ||||||||
Allele | WBVar00087847 | Inferred_automatically | From strain object: BT14 | ||||||
WBVar00241183 | Inferred_automatically | From strain object: JK3297 | |||||||
WBVar00088222 | Inferred_automatically | From strain object: NF773 | |||||||
WBVar00088223 | Inferred_automatically | From strain object: NF774 | |||||||
WBVar00249281 | Inferred_automatically | From strain object: NF963 | |||||||
WBVar00145702 | Inferred_automatically | From strain object: VC642 | |||||||
WBVar00250261 | |||||||||
WBVar01500079 | |||||||||
WBVar00432356 | |||||||||
WBVar00432357 | |||||||||
WBVar00432358 | |||||||||
WBVar01482237 | |||||||||
WBVar00432359 | |||||||||
WBVar00432360 | |||||||||
WBVar01795040 | |||||||||
WBVar00432361 | |||||||||
WBVar00432362 | |||||||||
WBVar00432363 | |||||||||
WBVar00432364 | |||||||||
WBVar00432365 | |||||||||
WBVar00432366 | |||||||||
WBVar01498996 | |||||||||
WBVar01499925 | |||||||||
WBVar02058448 | |||||||||
WBVar02121028 | |||||||||
WBVar00241185 | |||||||||
WBVar01492431 | |||||||||
WBVar01730440 | |||||||||
WBVar00932532 | |||||||||
WBVar00932533 | |||||||||
WBVar00932534 | |||||||||
WBVar00932535 | |||||||||
WBVar00932536 | |||||||||
WBVar00932537 | |||||||||
WBVar00932538 | |||||||||
WBVar00932539 | |||||||||
WBVar00932540 | |||||||||
WBVar00932541 | |||||||||
WBVar00932542 | |||||||||
WBVar00932543 | |||||||||
WBVar00932544 | |||||||||
WBVar01966831 | |||||||||
WBVar00932545 | |||||||||
WBVar00932546 | |||||||||
WBVar00932547 | |||||||||
WBVar00932548 | |||||||||
WBVar00932549 | |||||||||
WBVar00932550 | |||||||||
WBVar00932551 | |||||||||
WBVar00932552 | |||||||||
WBVar00932553 | |||||||||
WBVar00932554 | |||||||||
WBVar00932555 | |||||||||
WBVar00932556 | |||||||||
WBVar00932557 | |||||||||
WBVar01855965 | |||||||||
WBVar01855966 | |||||||||
WBVar01855967 | |||||||||
WBVar00249282 | |||||||||
WBVar00266242 | |||||||||
WBVar00191471 | |||||||||
WBVar00191472 | |||||||||
WBVar01500245 | |||||||||
Strain (8) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (44) | |||||||||
Structured_description | Concise_description | fbl-1 encodes proteins orthologous to the vertebrate basement membrane protein fibulin; fbl-1 activity is essential for gonad and body morphology, as well as for reproduction; fbl-1 interacts genetically with gon-1 and mig-17, which encode ADAMTS metalloproteases essential for gonad development; the FBL-1C isoform is expressed in anterior and posterior intestinal cells and localizes to the gonad and pharyngeal basement membranes; the FBL-1D isoform is expressed in some head and tail body wall muscle cells. | Paper_evidence | WBPaper00003411 | |||||
WBPaper00003910 | |||||||||
WBPaper00005654 | |||||||||
WBPaper00024609 | |||||||||
WBPaper00024610 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 11 Dec 2014 00:00:00 | ||||||||
Automated_description | An extracellular matrix structural constituent. Involved in extracellular matrix organization; positive regulation of locomotion; and protein localization. Located in basement membrane. Expressed in ALM; GLR; basal lamina; hyp7 syncytium; and nerve ring. Is an ortholog of human FBLN1 (fibulin 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F56H11.1a | |||||||
F56H11.1b | |||||||||
F56H11.1c | |||||||||
F56H11.1d | |||||||||
F56H11.1e | |||||||||
F56H11.1f | |||||||||
F56H11.1g | |||||||||
F56H11.1h | |||||||||
Corresponding_CDS_history | F56H11.1:wp39 | ||||||||
F56H11.1c:wp141 | |||||||||
Corresponding_transcript | F56H11.1a.1 | ||||||||
F56H11.1b.1 | |||||||||
F56H11.1c.1 | |||||||||
F56H11.1d.1 | |||||||||
F56H11.1e.1 | |||||||||
F56H11.1f.1 | |||||||||
F56H11.1g.1 | |||||||||
F56H11.1h.1 | |||||||||
Other_sequence (29) | |||||||||
Associated_feature | WBsf655044 | ||||||||
WBsf655045 | |||||||||
WBsf997438 | |||||||||
WBsf228843 | |||||||||
WBsf228844 | |||||||||
Experimental_info | RNAi_result | WBRNAi00062661 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00048771 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116170 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027780 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048773 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015848 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110311 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018168 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048772 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00003660 | ||||||||
WBCnstr00011182 | |||||||||
WBCnstr00011223 | |||||||||
WBCnstr00011224 | |||||||||
WBCnstr00011594 | |||||||||
WBCnstr00011920 | |||||||||
WBCnstr00036967 | |||||||||
Construct_product | WBCnstr00011182 | ||||||||
WBCnstr00011224 | |||||||||
WBCnstr00011920 | |||||||||
WBCnstr00036967 | |||||||||
Microarray_results (40) | |||||||||
Expression_cluster (207) | |||||||||
Interaction (64) | |||||||||
Map_info | Map | IV | Position | 4.30419 | Error | 0.002555 | |||
Positive | Positive_clone | F56H11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4280 | |||||||
Pseudo_map_position | |||||||||
Reference (28) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |