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WormBase Tree Display for Expression_cluster: WBPaper00040998:nhr-80_regulated

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Name Class

WBPaper00040998:nhr-80_regulatedDescriptionDifferentially expressed genes in nhr-80(tm1011) compared to wild-type animals using microarray analysis.
SpeciesCaenorhabditis elegans
AlgorithmPair-wise significance testing (mutant vs. wild-type) was performed using the Bioconductor package limma and p-values were initially corrected for multiple testing using the false discovery rate (FDR) method of Benjamini and Hochberg. Criteria for differential expression was set by employing log2(ratio) >= 0.848 and p-value < 0.001.
ReferenceWBPaper00040998
Microarray_resultscea2.c.35201Fold change: 0.0213443790117874, p-value: 5.11E-08
cea2.c.39182Fold change: 0.222210670291643, p-value: 1.58E-06
cea2.p.124403Fold change: 0.29730177875068, p-value: 3.49E-06
cea2.i.25955Fold change: 0.285190928967106, p-value: 6.65E-06
cea2.c.31436Fold change: 0.406126198178118, p-value: 2.85E-05
cea2.i.54612Fold change: 0.435275281648062, p-value: 9.18E-05
cea2.c.19871Fold change: 3.09512998708478, p-value: 9.37E-05
cea2.c.21064Fold change: 2.18858740252148, p-value: 8.64E-05
cea2.d.33151Fold change: 0.30145195692269, p-value: 7.59E-05
cea2.i.18053Fold change: 0.211686328090632, p-value: 7.33E-05
cea2.c.02775Fold change: 2.28152743173685, p-value: 0.000145
cea2.p.127901Fold change: 0.45375957765858, p-value: 0.000134
cea2.p.90417Fold change: 0.466516495768404, p-value: 0.00016
cea2.p.142010Fold change: 0.444421340583285, p-value: 0.000202
cea2.p.05632Fold change: 2.29739670999407, p-value: 0.000254
cea2.p.158386Fold change: 0.486327473706143, p-value: 0.000291
cea2.i.36871Fold change: 0.473028823362798, p-value: 0.000284
cea2.c.13321Fold change: 0.479632059662632, p-value: 0.000243
cea2.p.19901Fold change: 2.11403608112276, p-value: 0.000262
cea2.d.04407Fold change: 1.91852823865053, p-value: 0.00037
cea2.p.67570Fold change: 1.91852823865053, p-value: 0.000392
cea2.p.149038Fold change: 0.438302860658018, p-value: 0.000406
cea2.d.33921Fold change: 0.447512535463986, p-value: 0.000385
cea2.c.06057Fold change: 2.77021893622185, p-value: 0.000369
cea2.i.31671Fold change: 0.506979739895015, p-value: 0.000417
cea2.c.16150Fold change: 0.543367431263029, p-value: 0.000546
cea2.i.35082Fold change: 0.241484082231211, p-value: 0.000482
cea2.p.141148Fold change: 0.447512535463986, p-value: 0.000616
cea2.p.114258Fold change: 0.524858341811534, p-value: 0.000588
cea2.i.20094Fold change: 2, p-value: 0.000601
cea2.c.21122Fold change: 3.05251841792112, p-value: 0.00049
cea2.p.75989Fold change: 0.406126198178118, p-value: 0.000565
cea2.d.44087Fold change: 0.524858341811534, p-value: 0.000522
cea2.i.22724Fold change: 0.166085726762064, p-value: 0.000613
cea2.p.87235Fold change: 0.469761374607006, p-value: 0.000705
cea2.c.20147Fold change: 1.84037530124975, p-value: 0.000735
cea2.c.16346Fold change: 3.63007662126864, p-value: 0.000816
cea2.d.16969Fold change: 0.222210670291643, p-value: 0.000841
cea2.c.47012Fold change: 0.469761374607006, p-value: 0.000841
cea2.c.47027Fold change: 0.463294030945185, p-value: 0.000843
cea2.d.20845Fold change: 0.363493129330078, p-value: 0.000936
GeneWBGene00001399
WBGene00001397
WBGene00011668
WBGene00002012
WBGene00001398
WBGene00010034
WBGene00004481
WBGene00010476
WBGene00019604
WBGene00014046
WBGene00009119
WBGene00012664
WBGene00017418
WBGene00017688
WBGene00005002
WBGene00008917
WBGene00019495
WBGene00012481
WBGene00010478
WBGene00019730
WBGene00001598
WBGene00014003
WBGene00002048
WBGene00016892
WBGene00001068
WBGene00009030
WBGene00010481
WBGene00006536
WBGene00021337
WBGene00022597
WBGene00007875
WBGene00018954
WBGene00004498
WBGene00016670
WBGene00019732
WBGene00017500
Attribute_ofMicroarray_experimentWBPaper00040998:nhr-80_vs_WT_rep1
WBPaper00040998:nhr-80_vs_WT_rep2
WBPaper00040998:nhr-80_vs_WT_rep3
WBPaper00040998:nhr-80_vs_WT_rep4
RegulationRegulated_by_geneWBGene00003670
Associated_withLife_stageWBls:0000038