- WBPmat00005509
ASE motif of Etchberger et al. (2007); bound by CHE-1 in vitro.
- WBPmat00005112
Motif number 8 predicted by Elemento and Tavazoie (2005).
- WBPmat00005495
Matrix no. 8 correlated with muscle-specific gene expression, from Zhao et al. (2007).
- WBPmat00005517
Motif number 1-8 predicted by Mortazavi et al. (2010); previously found by Elemento and Tavazoie (2005) as highly significant motif (4th out of 375).
- WBPmat00000065
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000068
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000064
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.
- WBPmat00000067
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.