- WBPmat00000065
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000068
Class III PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. An adenosine was highly preferred in position +5, as in Class I.
- WBPmat00000067
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.
- WBPmat00000064
Class II PUF-11-binding RNA site. The AU dinucleotide was located in position +7 and +8. The indentities of bases between the UGU and AU elements were more degenerate that in Classes I and III. Class II RNAs were enriched for C at the -1 position.
- WBPmat00005486
Motif A from rex sites, as defined in WBPaper00028816/pmid17122774.
- WBPmat00005484
Tandem motif associated with poly(A)+ site in ribosomal mRNA 3' UTRs.
- WBPmat00000048
P1a, found in PHA-4-regulated pharyngeal genes; predicted to act as a weak, variable enhancer in pharyngeal cells after the pharynx primordium forms; weight matrix.
- WBPmat00000038
P1b, found in PHA-4-regulated pharyngeal genes; predicted to act as a weak, variable enhancer in pharyngeal cells after the pharynx primordium forms; frequency matrix.
- WBPmat00000037
P1a, found in PHA-4-regulated pharyngeal genes; predicted to act as a weak, variable enhancer in pharyngeal cells after the pharynx primordium forms; frequency matrix.
- WBPmat00000049
P1b, found in PHA-4-regulated pharyngeal genes; predicted to act as a weak, variable enhancer in pharyngeal cells after the pharynx primordium forms; weight matrix.