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[
WormBook,
2006]
A distinctive feature of polarized epithelial cells is their specialized junctions, which contribute to cell integrity and provide platforms to orchestrate cell shape changes. The chapter discusses the composition and assembly of C. elegans cell-cell and cell-extracellular matrix junctions, proteins that anchor the cytoskeleton and mechanisms involved in establishing epithelial polarity. The focus remains cellular and does not properly deal with epithelial cells in the context of the developing embryo.
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[
WormBook,
2006]
Sarcomeres within body wall muscle in C. elegans include attachments to the sarcolemma that are remarkably similar in structure to vertebrate adhesion complexes. Crucial early steps in muscle sarcomere assembly, a highly orchestrated affair involving many proteins, involve the assembly of these sarcomere attachments. The steps involved in initiating the correct placement of these attachments and other sarcomere substructures are poorly understood. Using mutants in C. elegans we are attempting to dissect the various steps in this process. We review what has been discovered to date and present a model of sarcomere assembly that initiates at the plasma membrane and involves proteins within muscle, the hypodermis and within the extracellular matrix.
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[
2011]
Transient receptor potential (TRP) family channels are conserved from Caenorhabditis elegans to humans. About 28 TRP members have been identified in mammals. On the basis of their sequence homology and functional similarity, these channels are further divided into seven subfamilies. Accumulating evidence shows that mammalian TRP channels are broadly involved in regulating sensory physiology, as they are important for sensing a wide variety of physical and chemical cues from both intracellular and extracellular sides.1
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The body wall muscle cells of Caenorhabditis elegans are a developmental system in which questions of gene expression in determination of muscle cell fates and in differentiation to produce functioning myofibrillar contracile units are examined by genetic, molecular, and cellular techniques. These approaches have been singularly useful in understanding the requirements of nonmyosin proteins and activities in the assembly of myosin into thick myofilaments and of membrane and extracellular proteins in the organization of myofilaments into ordered
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[
Methods Mol Biol,
2017]
The Rat Sarcoma (RAS) GTPAse-mediated extracellular signal-regulated kinase (ERK) pathway regulates multiple biological processes across metazoans. In particular during Caenorhabditis elegans oogenesis, ERK signaling has been shown to regulate over seven distinct biological processes in a temporal and sequential manner. To fully elucidate how ERK signaling cascade orchestrates these different biological processes in vivo, identification of the direct functional substrates of the pathway is critical. This chapter describes the methods that were used to identify ERK substrates in a global manner and study their functions in the germline. These approaches can also be generally applied to study ERK-dependent biological processes in other systems.
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[
WormBook,
2007]
The nematode cuticle is an extremely flexible and resilient exoskeleton that permits locomotion via attachment to muscle, confers environmental protection and allows growth by molting. It is synthesised five times, once in the embryo and subsequently at the end of each larval stage prior to molting. It is a highly structured extra-cellular matrix (ECM), composed predominantly of cross-linked collagens, additional insoluble proteins termed cuticlins, associated glycoproteins and lipids. The cuticle collagens are encoded by a large gene family that are subject to strict patterns of temporal regulation. Cuticle collagen biosynthesis involves numerous co- and post-translational modification, processing, secretion and cross-linking steps that in turn are catalysed by specific enzymes and chaperones. Mutations in individual collagen genes and their biosynthetic pathway components can result in a range of defects from abnormal morphology (dumpy and blister) to embryonic and larval death, confirming an essential role for this structure and highlighting its potential as an ECM experimental model system.
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[
2008]
Germline stem cells (GSCs) can generate haploid gametes, sperms or oocyte, which are responsible for transmitting genetic information from generation to generation. Because GSCs can be easily identified and gene functions can be readily manipulated in Drosophila and C. elegans, their niches were among the first to be functionally and anatomically defined. Genetic and cell biological studies in these systems have first shown that stem cell function is controlled by extracellular cues from the niche, and intrinsic genetic programs within the stem cells. Important progress has also recently been made in localizing GSCs in the mouse testis. Here I will review recent progress and compare the differences and commonalities of GSC niches from different systems. Since the studies on GSC niches in Drosophila and C. elegans have provided guiding principles for initial identification of niches in other systems, I hope that this review will provide some stimulating thoughts about niche structures and functions of adult stem cells in somatic systems.
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[
WormBook,
2005]
Basement membranes are thin, specialized extracellular matrices surrounding most tissues in all metazoans. The compositions and functions of basement membranes have generally been well conserved throughout the subkingdom. Genetic analyses of basement membrane components in C. elegans have provided insights into their assembly and functions during development. Immuno- or GFP-tagged localization studies have shown that basement membranes on different tissues, or even sub-regions of tissues, contain different sets of proteins or alternatively spliced isoforms of them. Several components, including laminin, perlecan, type IV collagen and possibly osteonectin/SPARC, are essential for completion of embryogenesis, being necessary for tissue organization and structural integrity. In contrast, type XVIII collagen and nidogen are not required for viability but primarily influence organization of the nervous system. All of these proteins, with the exception of nidogen and the addition of fibulin, have roles of varying degree in morphogenesis of the gonad. A major family of cellular receptors for basement membrane proteins, the integrins, have also been characterized in C. elegans. As one might expect, integrins have been shown to function in many of the same processes as their potential ligands, the basement membrane components. While much remains to be explored, studies of basement membranes in C. elegans have been highly informative and hold great promise for improving our understanding of how these structures are assembled and how they function in development.