- WBPaper00065623:80
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 80 expressed in: RMD.
- WBPaper00028802:intestine_unique
To select a set of genes that are candidates to be expressed strongly and exclusively in the intestine, authors consider only genes for which the I/S tag ratio >= 3 and for which the tag number in the intestine library is >= 50. One hundred genes meet these two criteria. Twenty of these 100 genes encode ribosomal proteins or are involved in ribosome assembly, suggesting that the intestine persists as the major site of ribosome synthesis in the adult worm. However, because most ribosomal protein genes are unique in the genome and therefore must be widely expressed at other developmental stages, these genes were removed from the list to leave the set of 80 highly-expressed intestine-specific or intestine-enriched (non-ribosomal) genes.
Genes with unique expression in intestine, according to SAGE analysis on dissected intestine.
- WBPaper00031040:Cluster_6
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF- dauer up
- WBPaper00031040:Cluster_2
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF-beta/IIS shared down
- WBPaper00031040:Cluster_5
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF-beta/IIS shared up
- WBPaper00031040:Cluster_3
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF-beta adult /IIS shared up
- WBPaper00031040:Cluster_4
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF-beta adult-specific down/IIS up
- WBPaper00031040:Cluster_1
Hierachical clustering by gene and arrays of log2 expression rations was done after genes that were present in 80% of the arrays were filtered (uncentered correlation, average linking) in Cluster.
TGF-beta adult-specific up/dauer down
- WBPaper00062534:fat-P-80_downregulated
Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05
Transcripts that showed significantly decreased expression in animals grown with supplementation of dietary fat P-80.
- WBPaper00062534:fat-P-80_upregulated
Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05
Transcripts that showed significantly increased expression in animals grown with supplementation of dietary fat P-80.