- WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
Limma Package. When generating the contrast matrix in limma: wildtype data was counted as wild-type and rpl-33 & rpl-5 data were both counted as RP null data. For this reason there is only one fold change value per gene as calculated by the difference between RP null RNA and wild-type RNA.
Transcripts that showed significantly decreased expression in rpl-5(cc5998) vs wild type (PD1074) and rpl-33(cc2558) vs wild type (PD1074) animals.
- WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
Limma Package. When generating the contrast matrix in limma: wildtype data was counted as wild-type and rpl-33 & rpl-5 data were both counted as RP null data. For this reason there is only one fold change value per gene as calculated by the difference between RP null RNA and wild-type RNA.
Transcripts that showed significantly increased expression in rpl-5(cc5998) vs wild type (PD1074) and rpl-33(cc2558) vs wild type (PD1074) animals.
- WBPaper00065623:41
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 41 expressed in: Amphid and phasmid sheath.
- WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly decreased expression in mir-35-41(nDf50) comparing to in N2 at 25C.
- WBPaper00050903:mir-35-41(nDf50)_20C_downregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly decreased expression in mir-35-41(nDf50) comparing to in N2 at 20C.
- WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly increased expression in mir-35-41(nDf50) comparing to in N2 at 25C.
- WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
Genes listed exhibited a fold change >= 1.5, with q-value <= 0.5 (Storey multiple testing correction with bootstrapping).
Probes that showed significantly increased expression in mir-35-41(nDf50) comparing to in N2 at 20C.