- WBPaper00046217:gas-1(fc21)_upregulated
The error threshold for peptide spectrum matches was set to a 1% false discovery rate (FDR). Protein expression was measured by the total of identified spectral counts normalized by the total number of spectral counts in each MS run in order to adjust for the variation in signal across runs.
Proteins that showed increased expression in gas-1(fc21) comparing to in N2, according to liquid chromatography and mass spectrometry analysis.
- WBPaper00046217:gas-1(fc21)_downregulated
The error threshold for peptide spectrum matches was set to a 1% false discovery rate (FDR). Protein expression was measured by the total of identified spectral counts normalized by the total number of spectral counts in each MS run in order to adjust for the variation in signal across runs.
Proteins that showed decreased expression in gas-1(fc21) comparing to in N2, according to liquid chromatography and mass spectrometry analysis.
- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly decreased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly increased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
Fold change > 4.0 for glp-1(ts) regulated genes, and fold change < 0.67 for skn-1(RNAi) regulated genes.
Genes with < 0.67 fold decreased expression in skn-1(RNAi) animals comparing to in N2 control at 25 centigrade. Fold change = glp-1(ts) + skn-1 RNAi vs. glp-1(ts) + vector