- WBPaper00038168:lin-35_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-35.
- WBPaper00038168:lin-15B(n744)_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-15B(n744).
- WBPaper00038168:lin-35_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-35.
- WBPaper00038168:lin-15B(n744)_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-15B(n744).
- [cgc6390]:Cluster_B
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster B.
- WBPaper00044091:Bpseudomallei_regulated_qPCR-confirmed
qPCR and microarray confirmed differentially expressed genes.
Genes that showed differential expression in adult animals after 12 hour exposure to B. pseudomallei R15 vs. exposure to OP50, confirmed by microarray and qPCR.
- WBPaper00053814:15C_downregulated_PY79
DESeq2 and EdgeR, adjusted p-value < 0.05.
Transcripts that are significantly downregulated at 15C compared to both 25C and 20C, with no statistical difference between 25C and 20C, in worms feeding B. subtilis PY79.