- WBPaper00034739:RIL17lessRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in RIL-17 than in RIL-14.
- WBPaper00034739:RIL17moreRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in RIL-17 than in RIL-14.
- WBPaper00039792:TempShiftIncrease
To identify differentially expressed transcripts during the worms temperature memory acquisition process, normalized intensity values from gene expression data sets of worms cultivated for 4 h after shifting the temperature to 17 centigrade were compared with those from reference gene expression data sets of worms isolated before shifting temperature, using Significance Analysis of Microarray software (SAM).
Genes with increased expression after temperature shift. Animals were grown at 23 centigrade until they grew to adult and then shifted to 17 centigrade. Expression levels compared 0 hours to 4 hours after temprature shift.
- WBPaper00039792:TempShiftDecrease
To identify differentially expressed transcripts during the worms temperature memory acquisition process, normalized intensity values from gene expression data sets of worms cultivated for 4 h after shifting the temperature to 17 centigrade were compared with those from reference gene expression data sets of worms isolated before shifting temperature, using Significance Analysis of Microarray software (SAM).
Genes with decreased expression after temperature shift. Animals were grown at 23 centigrade until they grew to adult and then shifted to 17 centigrade. Expression levels compared 0 hours to 4 hours after temprature shift.
- WBPaper00048929:ethosuximide_upregulated
FDR corrected p-value < 0.01, and calculated mean fold change > 2 or < -2 in all four strains analysed.
Genes that showed significantly increased expression in all four strains (N2, CZ1200, dnj-17(ok237) and dnj-14(tm3223)) after exposure to 1 mg per ml ethosuximide.
- WBPaper00048929:ethosuximide_downregulated
FDR corrected p-value < 0.01, and calculated mean fold change > 2 or < -2 in all four strains analysed.
Genes that showed significantly decreased expression in all four strains (N2, CZ1200, dnj-17(ok237) and dnj-14(tm3223)) after exposure to 1 mg per ml ethosuximide.
- WBPaper00034739:N2moreDR1350
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in N2 than in DR1350.
- WBPaper00034739:N2lessDR1350
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in N2 than in DR1350.
- WBPaper00034739:TreatmentAffectedGenes
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes with expression significantly affected by TREATMENT (non-dauer vs dauer), or TREATMENT X LINE at p < 0.001.
- WBPaper00061527:rev-1-B0491.6_7884
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 17, rev-1-B0491.6_7884, on the genome-wide coexpression clique map for the nematode GPL200 platform.