- WBPaper00065623:17
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 17 expressed in: sh2 (gonadal sheath distal).
- WBPaper00034739:RIL17lessRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in RIL-17 than in RIL-14.
- WBPaper00034739:RIL17moreRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in RIL-17 than in RIL-14.
- WBPaper00065984:pals-17(syb3980)_upregulated
Differential expression analyses were performed using limma-voom in Galaxy, adj p <= 0.05, logFC > 2
Transcripts that showed significantly increased expression in pals-17(syb3980) comparing to in N2 animals at young adult stage.
- WBPaper00065984:pals-17(syb3980)_downregulated
Differential expression analyses were performed using limma-voom in Galaxy, adj p <= 0.05, logFC > 2
Transcripts that showed significantly decreased expression in pals-17(syb3980) comparing to in N2 animals at young adult stage.
- WBPaper00039792:TempShiftIncrease
To identify differentially expressed transcripts during the worms temperature memory acquisition process, normalized intensity values from gene expression data sets of worms cultivated for 4 h after shifting the temperature to 17 centigrade were compared with those from reference gene expression data sets of worms isolated before shifting temperature, using Significance Analysis of Microarray software (SAM).
Genes with increased expression after temperature shift. Animals were grown at 23 centigrade until they grew to adult and then shifted to 17 centigrade. Expression levels compared 0 hours to 4 hours after temprature shift.
- WBPaper00061527:Y46G5A.28-Y44A6C.2
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 75, Y46G5A.28-Y44A6C.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00039792:TempShiftDecrease
To identify differentially expressed transcripts during the worms temperature memory acquisition process, normalized intensity values from gene expression data sets of worms cultivated for 4 h after shifting the temperature to 17 centigrade were compared with those from reference gene expression data sets of worms isolated before shifting temperature, using Significance Analysis of Microarray software (SAM).
Genes with decreased expression after temperature shift. Animals were grown at 23 centigrade until they grew to adult and then shifted to 17 centigrade. Expression levels compared 0 hours to 4 hours after temprature shift.