- WBPaper00051304:CEH-23_repressed
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were repressed by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00051304:CEH-23_activating
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were activated by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00065623:23
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 23 expressed in: Intestine middle.
- WBPaper00044743:wdr-23_neuron_upregulated
Differentially expressed genes at false discovery rate (FDR) of 0.05 were identified using the Cuffdiff module of the Cufflinks package.
Genes that showed increased mRNA expression in wdr-23(tm1817) comparing to in N2, and was rescued in wdr-23(tm1817);nuIs225[Pmyo-2::GFP, Psnb-1::WDR-23a].
- WBPaper00035211:age-1_vs_N2_upregulated
SAM
Genes that showed increased expression in age-1 (mg44, m333) comparing to N2DRM. 23 (8.3%) at FDR <3%, 44 (11%) at FDR <5.5%, with expression in age-1(mg44, m333) > N2DRM.
- WBPaper00042215:wdr-23(tm1817)_upregulated
Differentially expressed genes at false discovery rate (FDR) of 0.05 were identified using the Cuffdiff module of the Cufflinks package.
Genes up-regulated in wdr-23(tm1817) mutants comparing to in N2.
- WBPaper00042215:wdr-23(tm1817)_downregulated
Differentially expressed genes at false discovery rate (FDR) of 0.05 were identified using the Cuffdiff module of the Cufflinks package.
Genes down-regulated in wdr-23(tm1817) mutants comparing to in N2.
- WBPaper00059566:wdr-23(mac32)_upregulated
DESeq2, Fold Change > 2 or < 0.5.
Transcripts that showed significantly increased expression in wdr-23(mac32) embryos from parents fed with E. coliHB101, comparing to N2 embryos parents fed with E. coli HB101.
- WBPaper00059566:wdr-23(mac32)_downregulated
DESeq2, Fold Change > 2 or < 0.5.
Transcripts that showed significantly decreased expression in wdr-23(mac32) embryos from parents fed with E. coliHB101, comparing to N2 embryos parents fed with E. coli HB101.
- WBPaper00064502:nhr-23(kry61)_downregulated
DESeq2, fold change > 2 and a BenjaminiHochberg multiple hypothesis-corrected P-value cutoff of 0.05 was used as a cutoff for significant differen-tial expression.
Transcripts that showed significantly decreased expression in nhr-23(kry61) comparing to in control male animals.