- WBPaper00035892:Y.pestis_regulated
ANOVA t-test and fold-change calculations were performed using GeneSpring software.
Genes changed expression level after Y. pestis KIM5 treatment. P-value < 0.05.
- WBPaper00045865:biofilm_upregulated_A
Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR).
Genes that significantly increased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)
- WBPaper00045865:biofilm_downregulated_A
Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR).
Genes that significantly decreased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis 3384 mutant (that do not form biofilm)
- WBPaper00035892:KIM5_vs_OP50_Down
ANOVA t-test and fold-change calculations were performed using GeneSpring software.
Genes down-regulated greater than 2-fold, demonstrating a robust inducible response to Y. pestis.
- WBPaper00045865:biofilm_downregulated_B
Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR).
Genes that significantly decreased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis del-ypsI/ytbI mutant (that do not form biofilm)
- WBPaper00035892:KIM5_vs_OP50_Up
ANOVA t-test and fold-change calculations were performed using GeneSpring software.
Genes up-regulated greater than 2-fold, demonstrating a robust inducible response to Y. pestis KIM5.
- WBPaper00045865:biofilm_upregulated_B
Results are presented as the relative up- or downregulation for genes with a difference of 2 fold or more after analyzing expression and using confidence limits with multiple testing corrections (Benjamini-Hochberg FDR).
Genes that significantly increased expression 1 our after biofilm was formed by Y. pseudotuberculosis YP III comparing to worms infected by Y. pseudotuberculosis del-ypsI/ytbI mutant (that do not form biofilm)
- WBPaper00061340:Y
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in Y cell according to single cell RNAseq.
- WBPaper00061340:B_F_K_Kp_U_Y
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in B cell, F cell, K cell, K' cell, U cell, Y cell according to single cell RNAseq.
- WBPaper00061340:Rectal_cell
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in B cell, F cell, K cell, K' cell, U cell, Y cell, rect_D, rect_VL, rect_VR according to single cell RNAseq.