- WBPaper00042234:xpa-1_upregulated
After pre-processing and normalization, the Student t-test was executed to reveal transcripts statistically significantly regulated at the 95% confidence level (P < 0.05) between xpa-1 and WT.
Genes that showed increased expression in xpa-1(ok698) comparing with N2 in mixed stages.
- WBPaper00047070:xpa-1_UV_downregulated
Differentially expressed genes were determined by ANOVA analysis using the Partek software package.
Genes with significantly decreased expression in xpa-1(ok698) animals after treated with 10mJ per square cm UV and harvested 6 hours later.
- WBPaper00047070:xpa-1_UV_upregulated
Differentially expressed genes were determined by ANOVA analysis using the Partek software package.
Genes with significantly increased expression in xpa-1(ok698) animals after treated with 10mJ per square cm UV and harvested 6 hours later.
- WBPaper00035429:UVC_downregulated
For both analyses, authors made the following comparisons: control vs. UVC-exposed in each strain (three total); all pairwise strain comparisons under control conditions (three total); and all pair-wise strain comparisons after UVC exposure (three total).
Genes downregulated by UVC exposure in all three strains (N2, glp-1, xpa-1).
- WBPaper00035429:UVC_upregulated
For both analyses, authors made the following comparisons: control vs. UVC-exposed in each strain (three total); all pairwise strain comparisons under control conditions (three total); and all pair-wise strain comparisons after UVC exposure (three total).
Genes upregulated by UVC exposure in all three strains (N2, glp-1, xpa-1).
- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly decreased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly increased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
Fold change > 4.0 for glp-1(ts) regulated genes, and fold change < 0.67 for skn-1(RNAi) regulated genes.
Genes with < 0.67 fold decreased expression in skn-1(RNAi) animals comparing to in N2 control at 25 centigrade. Fold change = glp-1(ts) + skn-1 RNAi vs. glp-1(ts) + vector