- WBPaper00045842:elt-2_dependent_hypoxia_upregulated
Cufflinks v2.1.1
Genes with significant upregulation following hypoxia in an ELT-2-dependent manner. RNAseq were performed on normoxia N2, hypoxia N2, normoxia elt-2(RNAi) and hypoxia elt-2(RNAi) animals.
- WBPaper00046858:elt-2(RNAi)_downregulated
Filtering for high-quality data resulted in 7,880 genes with expression values >2.5 fold over background in >70% of the microarrays. These gene expression profiles were analyzed with the SAM microarray analysis package; a two-class testing configuration was used to identify genes differentially-expressed during infection in untreated worms compared to elt-2(RNAi) worms, with a false discovery rate of 9%.
Genes that showed significantly decreased expression in elt-2(RNAi) comparing to in control RNAi worms.
- WBPaper00046858:elt-2(RNAi)_upregulated
Filtering for high-quality data resulted in 7,880 genes with expression values >2.5 fold over background in >70% of the microarrays. These gene expression profiles were analyzed with the SAM microarray analysis package; a two-class testing configuration was used to identify genes differentially-expressed during infection in untreated worms compared to elt-2(RNAi) worms, with a false discovery rate of 9%.
Genes that showed significantly increased expression in elt-2(RNAi) comparing to in control RNAi worms.
- WBPaper00049484:elt-2(RNAi)_downregulated_L4
Significant gene expression changes were identified using the RankProd R Package to implement the analysis, which identifies differentially expressed genes at a 10% FDR cutoff.
Transcripts that showed significantly decreased expression in elt-2(RNAi) at L4 larva.
- WBPaper00049484:elt-2(RNAi)_upregulated_L4
Significant gene expression changes were identified using the RankProd R Package to implement the analysis, which identifies differentially expressed genes at a 10% FDR cutoff.
Transcripts that showed significantly increased expression in elt-2(RNAi) at L4 larva.
- WBPaper00049484:elt-2(RNAi)_upregulated_L1
Significant gene expression changes were identified using the RankProd R Package to implement the analysis, which identifies differentially expressed genes at a 10% FDR cutoff.
Transcripts that showed significantly increased expression in elt-2(RNAi) at L1 larva.
- WBPaper00049484:elt-2(RNAi)_downregulated_L1
Significant gene expression changes were identified using the RankProd R Package to implement the analysis, which identifies differentially expressed genes at a 10% FDR cutoff.
Transcripts that showed significantly decreased expression in elt-2(RNAi) at L1 larva.