- WBPaper00042548:miRISC_enriched
Testable genes were defined as having reliable signals in two different biological replicates using the Agilent microarray chip. Multiple probes for the same gene were removed, keeping the probe with the lowest p-value as defined by a one-tailed t-test comparing all testable probes versus probes towards a designated gene. The testable data was then supplemented with the enrichment values (as percent ranks) of a fifth replicate, from another microarray platform GPL5883 (which had a single probe for each gene), and statistical significance was re-calculate. p < 0.001 was the final cutoff.
Genes enriched in neuronal miRNA-induced silencing complexes (miRISC) as detected by immunoprecipitations and microarray analysis.
- WBPaper00048988:neuron_expressed
DESeq. False discovry rate (FDR) < 0.1.
Transcripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
- WBPaper00048988:neuron_enriched
DESeq. False discovry rate (FDR) < 0.1.
Transcripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
- WBPaper00064789:Day12_vs_Day1_upregulated_neuron
DESeq2, log2FC > 1, FDR < 0.05
Neuronal proteins that showed significantly increased expression in day 12 adult comparing to in day 1 adult through in vivo TurboIDlabeling proteomic profiling.
- WBPaper00064789:Day3_vs_Day1_upregulated_neuron
DESeq2, log2FC > 1, FDR < 0.05
Neuronal proteins that showed significantly increased expression in day 3 adult comparing to in day 1 adult through in vivo TurboIDlabeling proteomic profiling.