- WBPaper00065623:89
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 89 expressed in: AIA.
- WBPaper00035211:age-1_vs_N2_downregulated
SAM
Genes that showed decreased expression in age-1 (mg44, m333) comparing to N2DRM. 253 (92%) at FDR <3%, 341 (89%) at FDR <5.5%, with expression in age-1(mg44, m333) < N2DRM
- WBPaper00049626:UNC-75_target
N.A.
mRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
- WBPaper00064624:iHg-induced_aggregome
N.A.
Proteins that aggregated specifically because of exposure to inorganic mercury. Day 1 adult animals were exposed to inorganic mercury for 24 hours. Authors identified 89 proteins that aggregated specifically in iHg-exposed C.elegans, whereas 59 proteins aggregated independently of iHg exposure. This expression cluster is iHg epecific.
- WBPaper00050094:mes-2(bn11)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00050094:mes-2(bn11)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00050496:unc-39(hp701)_regulated
DESeq
Genes regulated by unc-39(hp701). Authors compared genes enriched in FACS sorted GFP+ cells (RID, ALA, AIY, CAN and a sheath cell) vs. whole animal in WT hpIs202[Pceh-10GFP] (WT enriched sets), and genes enriched in FACS sorted GFP+ cells (ALA, AIY, CAN and a sheath cell) vs. whole animal in unc-39(hp701) hpIs202[Pceh-10GFP] (unc-39 enriched sets) at L2 larva stage. This set of genes are WT enriched but not unc-39 enriched, suggesting they are enriched in RID neurons.