- WBPaper00061341:28C_24h_upregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly increased expression after animals were exposed to 28C temperature for 24 hours.
- WBPaper00061341:28C_1h_downregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly decreased expression after animals were exposed to 28C temperature for 1 hour.
- WBPaper00035873:osmotically_regulated
Data across the wild type series was analyzed using the Significance analysis of Microarrays (SAM) algorithm (to calculate the False Discovery Rate (FDR)).
Genes with expression altered >= 3-fold at one or more timepoint by the osmotic changes
- WBPaper00061341:28C_24h_downregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly decreased expression after animals were exposed to 28C temperature for 24 hours.
- WBPaper00061341:28C_48h_upregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly increased expression after animals were exposed to 28C temperature for 48 hours.
- WBPaper00061341:28C_48h_downregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly decreased expression after animals were exposed to 28C temperature for 48 hours.
- WBPaper00061341:28C_1h_upregulated
Differentially expressed genes wereidentified using DESeq (v.1.18.0) by normalizing readsbased on the negative binomial distribution method andcomparing each HS timepoint to the 0-h control.
Transcripts that showed significantly increased expression after animals were exposed to 28C temperature for 1 hour.
- WBPaper00041939:control_vs_EtBr-exposed_3h
Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first.
Genes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -45h timepoint.
- WBPaper00041939:control_vs_EtBr-exposed_48h
Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first.
Genes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
- WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first.
Genes differentially expressed in control vs after UVC exposure and EtBr treatment at the -45h timepoint (3 hours after the first UVC dose).