- WBPaper00040990:PA14_upregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level induced by bacteria strain PA14.
- WBPaper00028789:PA14_vs_OP50_downregulated_8hr
At least 2 fold and P < 0.01, as determined by a t-test.
Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00040990:PA14_downregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level repressed by bacteria strain PA14.
- WBPaper00028789:PA14_vs_OP50_downregulated_4hr
At least 2 fold and P < 0.01, as determined by a t-test.
Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00028789:PA14_vs_OP50_upregulated_8hr
At least 2 fold and P < 0.01, as determined by a t-test.
Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00028789:PA14_vs_OP50_upregulated_4hr
At least 2 fold and P < 0.01, as determined by a t-test.
Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00024393:strongly_regulated_dauer_genes
Genes that are regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster.
Genes that are up or down regulated by more than 2.1 fold with the t-test p-value less than 0.01 are included in this cluster.