- WBPaper00035429:UVC_downregulated
For both analyses, authors made the following comparisons: control vs. UVC-exposed in each strain (three total); all pairwise strain comparisons under control conditions (three total); and all pair-wise strain comparisons after UVC exposure (three total).
Genes downregulated by UVC exposure in all three strains (N2, glp-1, xpa-1).
- WBPaper00061699:daf-18(ok480)_upregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly increased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00035429:UVC_upregulated
For both analyses, authors made the following comparisons: control vs. UVC-exposed in each strain (three total); all pairwise strain comparisons under control conditions (three total); and all pair-wise strain comparisons after UVC exposure (three total).
Genes upregulated by UVC exposure in all three strains (N2, glp-1, xpa-1).
- WBPaper00061699:daf-18(ok480)_downregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly decreased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00041906:I-3690_vs_I-4317_OP50_3d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and CNCM I-4317 strains and with CNCM I-3690 and control strain E.coli OP50 after 3 days of feeding.
- WBPaper00051311:VGLN-1-interacting
DESeq2
Transcripts that physically bind VGLN-1 protein, according to RNA sequencing on immunoprecipitation using GFP-Trap A proteins, by comparing results on Pvgln-1::vgln-1::gfp (kuIs102) (strain MH4920) with Pvgln-1::gfp (kuIs103) (strain MH4922)
- WBPaper00041906:I-4317_vs_OP50_10d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-4317 and control strain E.coli OP50 after 10 days of feeding.
- WBPaper00041906:I-3690_vs_OP50_3d
Differential expression was assayed via limma. Genes were considered differentially expressed when the multiple testing adjusted P-value < 0.01.
Differentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and control strain E.coli OP50 after 3 days of feeding.