- WBPaper00062193:skn-1(RNAi)_downregulated
Genes with an absolute fold changeof at least 2 and standard p-values below 0.05 were considered as differentially expressed.
Transcriptions that showed significantly decreased expression in skn-1(RNAi) comparing to empty vector injection into rrf-3(pk1426);daf-2(e1368) animals.
- WBPaper00041075:hcf-1(-)_skn-1(+)_upregulated
N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009).
Genes that were up regulated in the absence of hcf-1 and the presence of skn-1.
- WBPaper00062193:skn-1(RNAi)_upregulated
Genes with an absolute fold changeof at least 2 and standard p-values below 0.05 were considered as differentially expressed.
Transcriptions that showed significantly increased expression in skn-1(RNAi) comparing to empty vector injection into rrf-3(pk1426);daf-2(e1368) animals.
- WBPaper00047132:skn-1(RNAi)_downregulated
Fold change > 4.0 for glp-1(ts) regulated genes, and fold change < 0.67 for skn-1(RNAi) regulated genes.
Genes with >0.67 fold decreased expression in skn-1(RNAi) animals comparing to in N2 control at 25 centigrade. fold change = N2 + skn-1 RNAi vs. N2 + vector.
- WBPaper00053771:down_by_skn-1(RNAi)
Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1.
Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls.
- WBPaper00041075:hcf-1(-)_skn-1(+)_downregulated
N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009).
Genes that were down regulated in the absence of hcf-1 and the presence of skn-1.
- WBPaper00050332:skn-1(RNAi)_downregulated
Using the Cufflink package and CuffDiff application from Galaxy, FPKM (Fragments Per Kilobase of transcript per Million mapped reads) were calculated and tested for differential expression with a FDR score of 5%.
Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to in control animals.
- WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1.
Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls, after both were exposed to 300mM NaCl for 24 hours.