- [cgc6390]:Cluster_B
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster B.
- WBPaper00044091:Bpseudomallei_regulated_qPCR-confirmed
qPCR and microarray confirmed differentially expressed genes.
Genes that showed differential expression in adult animals after 12 hour exposure to B. pseudomallei R15 vs. exposure to OP50, confirmed by microarray and qPCR.
- WBPaper00053814:15C_downregulated_PY79
DESeq2 and EdgeR, adjusted p-value < 0.05.
Transcripts that are significantly downregulated at 15C compared to both 25C and 20C, with no statistical difference between 25C and 20C, in worms feeding B. subtilis PY79.
- WBPaper00053771:down_by_skn-1(RNAi)
Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1.
Transcripts that showed significantly decreased expression in skn-1(RNAi) animals comparing to vector controls.
- WBPaper00053771:up_at_dpy-7(e88)
Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1.
Transcripts that showed significantly increased expression in dpy-7(e88) animals comparing to N2 animals.
- WBPaper00049498:npr-1(ur89)_regulated_1
Estimation of transcript abundance and significantly differentially expressed genes were identified by Cuffdiff using the quartile normalization method. Transcripts with a significant change between different conditions (adjusted p-value < 0.01 by the false discovery rate, FDR) were treated as signature for each comparison.
Genes that showed significantly altered expression between N2 and npr-1(ur89) strains exposed to either the nematocidal B. thuringiensis B-18247, the pathogenic P. aeruginosa PA14, or the control E. coli OP50.
- WBPaper00053814:25C_upregulated_PY79
DESeq2 and EdgeR, adjusted p-value < 0.05.
Transcripts that are significantly upregulated at 25C compared to both 15C and 20C, with no statistical difference between 15C and 20C, in worms feeding B. subtilis PY79.