- WBPaper00065623:30
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 30 expressed in: pm3_pm4_pm5 and pm6_pm7 (pharyngeal muscle).
- WBPaper00066204:CdCl2_upregulated_mRNA
edgeR, fold change > 2, p < 0.05.
Transcripts that showed significantly increased expression in N2 animals exposed to 30 uM CdCl2 for five days starting from L4.
- WBPaper00066204:CdCl2_downregulated_mRNA
edgeR, fold change > 2, p < 0.05.
Transcripts that showed significantly decreased expression in N2 animals exposed to 30 uM CdCl2 for five days starting from L4.
- WBPaper00034761:hlh-30_upregulated
Authors considered as differentially expressed those genes whose probe sets had a P < 0.01 and log2(fold-change) >= 0.7.
Genes with increased expression in hlh-30(tm1978) mutant.
- WBPaper00034761:hlh-30_downregulated
Authors considered as differentially expressed those genes whose probe sets had a P < 0.01 and log2(fold-change) >= 0.7.
Genes with decreased expression in hlh-30(tm1978) mutant.
- WBPaper00061439:unc-30(ok613)_upregulated
Genes exhibiting at least two-fold change were considered differentially expressed.
Transcripts that showed significantly increased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.
- WBPaper00061439:unc-30(ok613)_downregulated
Genes exhibiting at least two-fold change were considered differentially expressed.
Transcripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.
- WBPaper00061340:K_Kprime
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in K cell, K' cell according to single cell RNAseq.
- WBPaper00061007:HB101_downregulated
DESeq2 fold change > 2, p-value < 0.01.
Transcripts that showed significantly decreased expression after fed by bacteria E. coli HB101 for 30 generations comparing to animals fed by E. coli OP50.