- WBPaper00065623:28
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 28 expressed in: Intestine posterior.
- WBPaper00049083:post-dauer-development_downregulated
Less than 1% false recovery rate (FDR) was used for acceptance of peptide assignment.
Proteins that showed significantly decreased expression (>2 fold) during post dauer development in lin-28(n719) comparing to those in continuous development state in lin-28(n719).
- WBPaper00049083:post-dauer-development_upregulated
Less than 1% false recovery rate (FDR) was used for acceptance of peptide assignment.
Proteins that showed significantly increased expression (>2 fold) during post dauer development in lin-28(n719) comparing to those in continuous development state in lin-28(n719).
- WBPaper00050234:lin-28(RNAi)_upregulated
Cuffdiff was used to search for the differentially expressed genes (FDR < 0.1).
Transcripts that showed significantly increased expression in lin-28(RNAi) animals comparing to in control animals.
- WBPaper00050234:lin-28(RNAi)_downregulated
Cuffdiff was used to search for the differentially expressed genes (FDR < 0.1).
Transcripts that showed significantly decreased expression in lin-28(RNAi) animals comparing to in control animals.
- WBPaper00040932:lin-28_regulated_microRNA
Paired t-test. Genes with p-value < 0.05 and fold change >= 1.5 were considered differentially expressed.
MicroRNA that showed differential expression for more than 1.5 fold in the absence of lin-28.
- WBPaper00061527:fbxc-28-sdz-28
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 62, fbxc-28-sdz-28, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:Y116A8C.19-F38C2.7
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 28, Y116A8C.19-F38C2.7, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:Y46G5A.28-Y44A6C.2
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 75, Y46G5A.28-Y44A6C.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
- WBPaper00061527:rab-28-jbts-14_9542
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 42, rab-28-jbts-14_9542, on the genome-wide coexpression clique map for the nematode GPL200 platform.