- WBPaper00053606:N2_vs_elt-7(tm840)_downregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are down-regulated in wild-type N2 larvae compared to elt-7(tm840) larvae. In this case, no gene was downregulated.
- WBPaper00053606:N2_vs_elt-7(tm840)_upregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are up-regulated in wild-type N2 larvae compared to elt-7(tm840) larvae.
- WBPaper00053606:N2_vs_elt-2(ca15)\;elt-7(tm840)_upregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are up-regulated in wild-type N2 larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:N2_vs_elt-2(ca15)\;elt-7(tm840)_downregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are down-regulated in wild-type N2 larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15)\;elt-7(tm840)_doenregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are down-regulated in elt-2(ca15) larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15)\;elt-7(tm840)_upregulated
RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison.
Genes that are up-regulated in elt-2(ca15) larvae compared to elt-2(ca15);elt-7(tm840) larvae.
- WBPaper00045842:elt-2_dependent_hypoxia_upregulated
Cufflinks v2.1.1
Genes with significant upregulation following hypoxia in an ELT-2-dependent manner. RNAseq were performed on normoxia N2, hypoxia N2, normoxia elt-2(RNAi) and hypoxia elt-2(RNAi) animals.
- WBPaper00044501:gld-1_let-7_regulated
N.A.
Proteins that showed differential expression in (B) let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge], and in (C) gld-1(op236); let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge]