- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00047070:DAF-16-dependent_UV_response
Differentially expressed genes were determined by ANOVA analysis using the Partek software package.
DAF-16-dependent genes as being significantly induced (FC > 1.5; P < 0.01) following UV treatment in daf-2 mutants and more strongly induced following UV treatment in daf-2 versus daf-2;daf-16, daf-2 versus N2, and N2 versus daf-16.
- [cgc5976]:class_1
hierarchical clustering
The cluster contains genes that are upregulated with daf-2 RNAi treatment and in daf-2 pathway mutants, and downregulated with daf-16 RNAi treatment.
- [cgc5976]:class_2
hierarchical clustering
The cluster contains genes that are upregulated with daf-16 RNAi treatment and downregulated with daf-2 RNAi treatment and in daf-2 pathway mutants.
- WBPaper00055827:pfd-6(gk493446)_upregulated
Limma version 3.24.15. Fold change < 0.67 (p < 0.05).
Transcripts that showed significantly increased expression in pfd-6(gk493446); daf-2(e1370) comparing to in daf-2(e1370).
- WBPaper00044128:daf-2(e1370)_upregulated
t-test
Proteins with increased expression in glp-4(bn2);daf-2(e1370) comparing to in glp-4(bn2) daf-16(mgDf50);daf-2(e1370) according to HPLC-MS proteomic analysis.
- WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_upregulated
edgeR
Genes that showed significantly incresed level of post-transcriptional processing in daf-2(e1370)rsks-1(ok1255) vs N2 animals. Diferential Polysome Asso-ciation Ratio (DPAR) = log2 fold changes of the ratio (daf-2 rsks-1 polysomal associated mRNA / daf-2 rsks-1 total mRNA) / (N2 polysomal associated mRNA / N2 total mRNA).