- WBPaper00040412:germline-regulated_daf-16_target
All lists used an Fs:Ptab 0.01 cutoff.
Genes that were regulated by DAF-16 in response to germline loss, identified by comparing differentially expression genes between glp-1(e2141ts, 25C) vs. glp-1(e2141ts, 20C) and daf-16;glp-1(e2141ts, 25C) vs. daf-16;glp-1(e2141ts, 20C).
- WBPaper00047070:DAF-16-dependent_UV_response
Differentially expressed genes were determined by ANOVA analysis using the Partek software package.
DAF-16-dependent genes as being significantly induced (FC > 1.5; P < 0.01) following UV treatment in daf-2 mutants and more strongly induced following UV treatment in daf-2 versus daf-2;daf-16, daf-2 versus N2, and N2 versus daf-16.
- WBPaper00035479:daf-16(RNAi)_downregulated
Significance Analysis of Microarray (SAM) was performed to identify genes that were differentially regulated in each of the comparisons.For DAF-16 regulated genes, 1% median false positive discovery rate was used.
Genes upregulated in daf-2(-) compared to daf-16(-); daf-2(-)
- WBPaper00035479:daf-16(RNAi)_upregulated
Significance Analysis of Microarray (SAM) was performed to identify genes that were differentially regulated in each of the comparisons.For DAF-16 regulated genes, 1% median false positive discovery rate was used.
Genes downregulated in daf-2(-) compared to daf-16(-); daf-2(-)
- [cgc5976]:class_1
hierarchical clustering
The cluster contains genes that are upregulated with daf-2 RNAi treatment and in daf-2 pathway mutants, and downregulated with daf-16 RNAi treatment.
- [cgc5976]:class_2
hierarchical clustering
The cluster contains genes that are upregulated with daf-16 RNAi treatment and downregulated with daf-2 RNAi treatment and in daf-2 pathway mutants.