- WBPaper00065623:14
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 14 expressed in: Differentiated germ.
- WBPaper00034739:RIL17lessRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed lower expression in RIL-17 than in RIL-14.
- WBPaper00034739:RIL17moreRIL14
The normalised data were analysed using a two-way ANOVA, testing for each gene the effects of LINE (N2, DR1350, RIL-14, RIL-17), TREATMENT (non-dauer vs dauer larva-inducing) and the LINE TREATMENT interaction, using a published PERL script.
Genes that showed higher expression in RIL-17 than in RIL-14.
- WBPaper00066004:ceh-14(ch3)_upregulated
DESeq2(1.36.0), fold change > 2, FDR < 0.05.
Transcripts that showed significantly increased expression in ceh-14(ch3) comparing to in N2 at L4 larva stage.
- WBPaper00057347:nhr-14(tm1473)_upreglated
Useq 8.7.4, fold change > 2, adjusted p-value < 0.05.
Transcripts that showed significantly increased expression in nhr-14(tm1473) comparing to in N2 at L4 larva stage.
- WBPaper00046421:cdc-48.2(tm659)_upregulated
Data are presented as mean SEM of at least three separate experiments if not specified otherwise and compared with multiple t-test corrected using the Holm-Sidak method for C. elegans experiments or the one-way analysis of variance (ANOVA) followed by Dunnett's multiple comparison tests for experiments on mammalian cells. The significance was set at P value < 0.05. All statistical analyses were performed using GraphPad Prism (version 6) statistical software (GraphPad Software; San Diego).
Proteins that showed significantly increased expression in cdc-48.2 (EM2[dpy-5(e907); cdc-48.2(tm659); sIs13872[ckb-2p::gfp, pCeh361]]) comparing to in WT (BC14636[dpy-5(e907); sIs13872[ckb-2p::gfp, pCeh361]]) upon tunicamycin treatment.
- WBPaper00048929:ethosuximide_upregulated
FDR corrected p-value < 0.01, and calculated mean fold change > 2 or < -2 in all four strains analysed.
Genes that showed significantly increased expression in all four strains (N2, CZ1200, dnj-17(ok237) and dnj-14(tm3223)) after exposure to 1 mg per ml ethosuximide.