- [cgc6390]:Cluster_B
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster B.
- WBPaper00040209:B.thuringiensis_downregulated_N2
Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR).
Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain N2 to pathogenic B. thuringiensis B-18247.
- WBPaper00040209:B.thuringiensis_upregulated_MY18
Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR).
Transcripts that showed significantly increased expression after 8 hour of exposure of C.elegans strain MY18 to pathogenic B. thuringiensis B-18247.
- WBPaper00040209:B.thuringiensis_upregulated_N2
Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR).
Transcripts that showed significantly increased expression after 8 hour of exposure of C.elegans strain N2 to pathogenic B. thuringiensis B-18247.
- WBPaper00040209:B.thuringiensis_downregulated_MY18
Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR).
Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY18 to pathogenic B. thuringiensis B-18247.
- WBPaper00040209:B.thuringiensis_downregulated_MY15
Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR).
Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY15 to pathogenic B. thuringiensis B-18247.
- WBPaper00045693:S.flexneri_upregulated
Authors used low stringency MASCOT search parameters.
Proteins that showed increased expression 24 hours after animals were infected by S. flexneri serotype 3b, based on 2D-DIGE and LC-MS proteomic analyisis.