- WBPaper00065623:68
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 68 expressed in: Uterine seam cells.
- WBPaper00049626:UNC-75_target
N.A.
mRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
- WBPaper00050094:mes-2(bn11)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00050094:mes-2(bn11)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
- WBPaper00050496:unc-39(hp701)_regulated
DESeq
Genes regulated by unc-39(hp701). Authors compared genes enriched in FACS sorted GFP+ cells (RID, ALA, AIY, CAN and a sheath cell) vs. whole animal in WT hpIs202[Pceh-10GFP] (WT enriched sets), and genes enriched in FACS sorted GFP+ cells (ALA, AIY, CAN and a sheath cell) vs. whole animal in unc-39(hp701) hpIs202[Pceh-10GFP] (unc-39 enriched sets) at L2 larva stage. This set of genes are WT enriched but not unc-39 enriched, suggesting they are enriched in RID neurons.
- WBPaper00058942:henn-1(pk2295)_downregulated
Differential expression analysis, including fold change and p value calculation, was done using DESeq2 v.1.18.1 with the Benjamin Hochberg multiple test correction applied (FDR = 0.05).
mRNAs significantly downregulated >1.3 fold in henn-1(pk2295) gonads comparing to in N2 gonads 68 - 70 hours after L1 larva stage.
- WBPaper00058942:henn-1(pk2295)_upregulated
Differential expression analysis, including fold change and p value calculation, was done using DESeq2 v.1.18.1 with the Benjamin Hochberg multiple test correction applied (FDR = 0.05).
mRNAs significantly upregulated >1.3 fold in henn-1(pk2295) gonads comparing to in N2 gonads 68 - 70 hours after L1 larva stage.