- WBPaper00055981:fog-2(q71)_downregulated
Cuffdiff
Transcripts that showed significantly decreased expression in fog-2(q71) comparing to in N2. cDNAs was synthesized using a 3'-anchored oligo-dT primer.
- WBPaper00055981:fog-2(q71)_upregulated
Cuffdiff
Transcripts that showed significantly increased expression in fog-2(q71) comparing to in N2. cDNAs was synthesized using a 3'-anchored oligo-dT primer.
- WBPaper00050928:male-mating_upregulated
SAM
Transcripts that showed significantly increased expression after 3.5 days of mating in 4-days post L4 adult fog-2(q71) males comparing to solitary males.
- WBPaper00054792:FOG-3_interacting
A Benjamini-Hochberg (BH) correction was applied (1% false discovery rate [FDR]). Only overlapping clusters called independently as significant in at least two replicates were retained.
Transcripts that binds with FOG-3 protein, according to in vivo crosslinking and immunoprecipitation (iCLIP) with strain JK4871[fog-3(q520) I; qSi41[fog-3::3xFLAG] II].
- WBPaper00051558:fog-2(q71)_regulated
Sleuth
Transcripts that showed significantly changed expression in fog-2(q71) comparing to in N2, at 6-day post-L4 adult hermaphrodite comparing and 1-day post L4 adult hermaphrodite animals.
- WBPaper00045521:Spermatogenic
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were enriched in spermatogenic fem-3(q96gf) gonads comparing to in oogenic fog-2(q71), according to RNAseq analysis.
- WBPaper00045521:Gender_Neutral
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
- WBPaper00045521:Oogenic
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were enriched in oogenic fog-2(q71) gonads comparing to in spermatogenic fem-3(q96gf), according to RNAseq analysis.
- WBPaper00048762:FOG-1_associated
To identify transcripts enriched in RIP samples, background corrected and normalized data were analyzed with the Bioconductor package Siggenes (siggenes 1.38.0) using two-class significance analysis of microarrays (SAM function).
FOG-1associated mRNAs identified by RIP-ChIP