- WBPaper00061651:FLP_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in FLP according to single cell RNAseq.
- WBPaper00040420:FLP_enriched
t-test ratio of fluorescence intensity >= 3.0, P < 0.01
Over-expressed genes in the FLP neuron cells isolated by fluorescent activated cell sorting (FACS).
- WBPaper00050225:flp-6(RNAi)_downregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly decreased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00050225:flp-6(RNAi)_upregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly increased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00065623:21
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 21 expressed in: Mitotic germ cells .
- WBPaper00060661:hypoxia_downregulated
Fold change > 2, p-value < 0.05.
Transcripts that showed significantly decreased expression at animals treated with 7% oxygen, comparing to animals grown at 21% oxygen.