- WBPaper00061651:FLP_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in FLP according to single cell RNAseq.
- WBPaper00040420:FLP_enriched
t-test ratio of fluorescence intensity >= 3.0, P < 0.01
Over-expressed genes in the FLP neuron cells isolated by fluorescent activated cell sorting (FACS).
- WBPaper00050225:flp-6(RNAi)_downregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly decreased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00050225:flp-6(RNAi)_upregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly increased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00065623:18
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 18 expressed in: Oocytes.
- WBPaper00061699:daf-18(ok480)_downregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly decreased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00061699:daf-18(ok480)_upregulated
edgeR, p-value < 0.05, fold change > 2.
Transcripts that showed significantly increased expression in strain GC1459 containing daf-18(ok480) comparing to control strain GC1171.
- WBPaper00061340:Ciliated_non_amphid_neuron
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in ADE, AQR, BAG, CEP, FLP, IL1 neuron, IL2 neuron, OLL, OLQ, PDE, PHA, PHB, PQR, PVR according to single cell RNAseq.