- WBPaper00037963:ife-1(ok1978)_downregulated
A spot that was more than 1.3-fold down-regulated in the ife-1 mutant and was statistically significant (t-test, p < 0.05) in three independent gels was manually excised from the preparative gel and analyzed by MALDI-TOF-MS (Applied Biosystems) after trypsin digestion.
Down-regulated proteins in ife-1(ok1978); fem-3(q20gf) mutant compared with the fem-3(q20gf) control.
- WBPaper00045521:Oogenic
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were enriched in oogenic fog-2(q71) gonads comparing to in spermatogenic fem-3(q96gf), according to RNAseq analysis.
- WBPaper00045521:Spermatogenic
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were enriched in spermatogenic fem-3(q96gf) gonads comparing to in oogenic fog-2(q71), according to RNAseq analysis.
- WBPaper00045521:Gender_Neutral
To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.
Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
- WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
DESeq2 v1.18.1, p < 0.01
Transcripts that bind FLAG-FBF-1 and FLAG-FBF-2 as detected by iCLIP analysis, with significantly higher expression in spermatogenic animals fem-3(q22) (JK5140 and JK5545) comparing to oogenic animals (JK5181 and JK5182).
- WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched
DESeq2 v1.18.1, p < 0.01
Transcripts that bind FLAG-FBF-1 and FLAG-FBF-2 as detected by iCLIP analysis, with significantly lower expression in spermatogenic animals fem-3(q22) (JK5140 and JK5545) comparing to oogenic animals (JK5181 and JK5182).