- WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
DESeq2 v1.18.1, p < 0.01
Transcripts that bind FLAG-FBF-1 and FLAG-FBF-2 as detected by iCLIP analysis, with significantly higher expression in spermatogenic animals fem-3(q22) (JK5140 and JK5545) comparing to oogenic animals (JK5181 and JK5182).
- WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched
DESeq2 v1.18.1, p < 0.01
Transcripts that bind FLAG-FBF-1 and FLAG-FBF-2 as detected by iCLIP analysis, with significantly lower expression in spermatogenic animals fem-3(q22) (JK5140 and JK5545) comparing to oogenic animals (JK5181 and JK5182).
- WBPaper00045618:puf-8_upregulated
DEXSeq (version 1.2.0) was used for differential expression analysis, with FDR cutoff of <0.01 and a minimum fold change requirement of 2-fold and excluded transcripts with <10 read counts.
Transcripts more abundant in puf-8(q725) fbf-1(ok91);lip-1(zh15) than in fbf-1(ok91);lip-1(zh15).
- WBPaper00045618:puf-8_downregulated
DEXSeq (version 1.2.0) was used for differential expression analysis, with FDR cutoff of <0.01 and a minimum fold change requirement of 2-fold and excluded transcripts with <10 read counts.
Transcripts less abundant in puf-8(q725) fbf-1(ok91);lip-1(zh15) than in fbf-1(ok91);lip-1(zh15).
- WBPaper00045618:fbf-1_upregulated
DEXSeq (version 1.2.0) was used for differential expression analysis, with FDR cutoff of <0.01 and a minimum fold change requirement of 2-fold and excluded transcripts with <10 read counts.
Transcripts more abundant in puf-8(q725) fbf-1(ok91);lip-1(zh15) than in puf-8(q725);lip-1(zh15).
- WBPaper00045618:fbf-1_downregulated
DEXSeq (version 1.2.0) was used for differential expression analysis, with FDR cutoff of <0.01 and a minimum fold change requirement of 2-fold and excluded transcripts with <10 read counts.
Transcripts less abundant in puf-8(q725) fbf-1(ok91);lip-1(zh15) than in puf-8(q725);lip-1(zh15).
- WBPaper00035905:FBF-1_Associated
SAM assigns a score to each probe set and estimates their false discovery rates (FDRs). SAM deemed 4722 probe sets as significantly enriched at an FDR of 2.25% or lower.
FBF-associated probe sets (FDR <2.25%)
- WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
DESeq2, fold change >= 2, FDR < 0.05.
Transcripts that showed significantly increased expression in global RPOA-2-depleted L1 animals (degron-GFP-rpoa-2;eft-3p-TIR1, +IAA), compared to controls (degron-GFP-rpoa-2,+IAA).