- WBPaper00057143:ztf-11(RNAi)_upregulated
DESeq2, FDR < 0.01
Transcripts that showed significantly increased expression in embryos with ztf-11(RNAi) performed on TV23837[ztf-11(wy1100); eri-1(mg366); oxIs322; ynIs49], comparing to animals injected with control vector.
- WBPaper00057143:ztf-11(RNAi)_downregulated
DESeq2, FDR < 0.01
Transcripts that showed significantly decreased expression in embryos with ztf-11(RNAi) performed on TV23837[ztf-11(wy1100); eri-1(mg366); oxIs322; ynIs49], comparing to animals injected with control vector.
- WBPaper00027111:eri-1(mg366)_upregulated
A t-test (5% confidence) was applied to the triplicate sample data for each transcript in each mutant to identify genes significantly elevated or decreased compared with the wild type.
Genes predicted to be upregulated more than 2.0 fold in eri-1(mg366) mutant worms as compared to wild-type animals (t-test P-value < 0.05).
- WBPaper00027111:eri-1(mg366)_downregulated
A t-test (5% confidence) was applied to the triplicate sample data for each transcript in each mutant to identify genes significantly elevated or decreased compared with the wild type.
Genes predicted to be downregulated more than 2.0 fold in eri-1(mg366) mutant worms as compared to wild-type animals (t-test P-value < 0.05).
- WBPaper00031070:rrf-3_eri-1_upregulated
T-test was performed to sequentially filter out genes with unreliable signal level between replicates (P < 0.05) and then to collect genes with significant signal level between samples (P < 0.05). Finally, genes were filtered for fold change (>2-fold up or <0.5-fold down).
Commonly over-expressed genes in rrf-3(pk1426) and eri-1(mg366) mutants vs. N2.
- WBPaper00045217:prg-1_progressively_regulated
Genes with more than 2-fold change in expression level are considered differentially expressed.
Genes altered by more than 2-Fold in late versus early generation prg-1 mutants and prg-1; daf-2 mutants. Samples include prg-1(pk2290), prg-1(n4357), prg-1(tm872), prg-1(pk2290); daf-2(e1368), prg-1(pk2290); daf-2(e1370), prg-1(tm872); daf-2(e1370), prg-1(tm872); daf-2(m41).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly decreased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
Cufflinks (v2.2.1). q < 0.05.
Transcripts that showed significantly increased expression in malt-1(db1194);npr-1(ad609) animals, in npr-1(ad609) ilc-17.1(tm5218) animals, and in npr-1(ad609) nfki-1(db1198) animals, comparing to the wild type control npr-1(ad609).
- WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
Fold change > 4.0 for glp-1(ts) regulated genes, and fold change < 0.67 for skn-1(RNAi) regulated genes.
Genes with < 0.67 fold decreased expression in skn-1(RNAi) animals comparing to in N2 control at 25 centigrade. Fold change = glp-1(ts) + skn-1 RNAi vs. glp-1(ts) + vector