WBPaper00046421:cdc-48.2(tm659)_upregulated Data are presented as mean SEM of at least three separate experiments if not specified otherwise and compared with multiple t-test corrected using the Holm-Sidak method for C. elegans experiments or the one-way analysis of variance (ANOVA) followed by Dunnett's multiple comparison tests for experiments on mammalian cells. The significance was set at P value < 0.05. All statistical analyses were performed using GraphPad Prism (version 6) statistical software (GraphPad Software; San Diego).
Proteins that showed significantly increased expression in cdc-48.2 (EM2[dpy-5(e907); cdc-48.2(tm659); sIs13872[ckb-2p::gfp, pCeh361]]) comparing to in WT (BC14636[dpy-5(e907); sIs13872[ckb-2p::gfp, pCeh361]]) upon tunicamycin treatment.
WBPaper00061527:cdc-42_17192-rab-5_18073 All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 220, cdc-42_17192-rab-5_18073, on the genome-wide coexpression clique map for the nematode GPL200 platform.