The hlh-30 gene encodes a C. elegans basic-helix-loop-helix (bHLH) transcription factor; We compared RNA from wild type worms and worms mutant for the hlh-30 gene to identify putative target genes of the HLH-30 transcription factor.
In Caenorhabditis elegans, the six proteins that make up the REF-1 family are HES homologs that act in both Notch dependent and Notch-independent pathways to regulate embryonic events. To further our understanding of how the REF-1 family works to coordinate post-embryonic cellular events, we performed transcriptome analysis of HLH-25 and HLH-29 mutant strains.
Illumina Genome Analyzer II paired end sequencing; Illumina sequencing of C. elegans dauer exit daf-2(el370) sample 2 DauerExitDAF2-2 polyA+ RNAseq random fragment library RW0001
Illumina Genome Analyzer II paired end sequencing; Illumina sequencing of C. elegans dauer entry daf-2(el370) sample 2 DauerEntryDAF2-2 polyA+ RNAseq random fragment library RW0001
Illumina Genome Analyzer II paired end sequencing; Illumina sequencing of C. elegans dauer daf-2(el370) sample 2 DauerDAF2-2 polyA+ 76bp SE RNAseq random fragment library RW0001
Illumina HiSeq 2000 paired end sequencing; Illumina sequencing of C. elegans dauer daf-2(el370) sample 2-1 DauerDAF2-2-1 polyA+ 100bp PE RNAseq random fragment library RW0001