Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Expressed in:
Anatomy term Supporting evidence
ventral nerve cord
Expr847
details
dorsal nerve cord
Expr847
details
gonad
body wall musculature
Expr847
details
germ line
  • Expr12343
    details
  • WBPaper00051039:germline_enriched
    details
AFD
WBPaper00050344:AFD-neuron_enriched
details
OLL
WBPaper00036375:enriched_in_PVD_OLL
details
PVD
WBPaper00036375:enriched_in_PVD_OLL
details
Expressed during:
Life stage Supporting evidence
larva Ce
Expr12343
details
4-cell embryo Ce
Expr847
details
adult Ce
1-cell embryo Ce
L3 larva Ce
Expr847
details
2-cell embryo Ce
L4 larva Ce
Expr847
details
Subcellular localization:
Cellular component Supporting evidence
cytoplasm
cytoplasmic stress granule
Expr14426
details
spindle midzone
Expr14427
details
midbody
Expr14427
details
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1147473Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1030148Tiling array
Tiling arrays expression graphs...
details
Wormviz
Expr1016075Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Anatomy terms:
4D expression movies:
    Expression Cluster:
    Expression clusters Description
    WBPaper00044746:Aging_downregulated_HeatShockProteins that showed significantly decreased expression in day 10 heat shocked adults comparing to heat shocked young adult animals.
    WBPaper00051039:germline_enrichedTranscripts enriched in germline by comparing dissected germline tissue with dissected intestine tissue, both injected with empty RNAi vector.
    WBPaper00050990:pharynx_expressedTranscripts expressed in pharynx, according to PAT-Seq analysis using Pmyo-2-GFP-3XFLAG mRNA tagging.
    WBPaper00055354:Rifampicin-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
    WBPaper00031252:AIN-1_IP_enrichedmRNAs that were significantly enriched in the AIN-1 immunoprecipitation samples, compared to the control total mRNAs in the input extracts (p < 0.01).
    WBPaper00040821:Au-NP_regulatedGenes with differeiential expression after exposed to Au-NP.
    WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
    WBPaper00049498:npr-1(ur89)_regulated_3Genes that showed significantly altered expression between N2 and npr-1(ur89) strains exposed to either the nematocidal B. thuringiensis B-18247, the pathogenic P. aeruginosa PA14, or the control E. coli OP50 for 12 or 24 hours.
    WBPaper00031532:Larva_Pan_Neuronal_DepletedWT-Pico Pan-neural Depleted Genes, with genes found multiple times in a single dataset removed (without dups).
    WBPaper00044426:rotenone_24h_downregulatedGenes with decreased RNA expression after 24 hours rotenone treatment
    WBPaper00056471:aak-1(tm1944)\;aak-2(ok524)_upregulatedTranscripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2.
    WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)Transcripts that showed significantly decreased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
    WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulatedPheromone-induced transcripts that showed significantly increased expression in post dauer animals comparing to wild type control.
    WBPaper00044501:gld-1_let-7_regulatedProteins that showed differential expression in (B) let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge], and in (C) gld-1(op236); let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge]
    WBPaper00055648:germline_expressedTranscripts expressed in germline, according to RNA tomography.
    WBPaper00044037:eat-2_downregulatedGenes with significantly decreased expression in eat-2(ad465) comparing to N2.
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 6h), according to RNAseq.
    WBPaper00049545:cco-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in cco-1(RNAi) comparing to in control animals.
    WBPaper00051245:body-wall-muscle_cytoplasm_expressedProteins expressed in body wall muscle cytoplasm, according to tissue specific APX enzyme expression using myo-3 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    [cgc6390]:Cluster_DGermline-enriched and sex-biased expression profile cluster D.
    WBPaper00026929:sir-2.1_overexpression_regulatedGenes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.
    WBPaper00046012:tdp-1(ok803)_downregulatedGenes that are significantly down regulated in tdp-1(ok803) poly(A) RNA-seq verses in N2.
    WBPaper00032425:up_in_zfp-1Genes with expression level up in zfp-1 mutant background.
    WBPaper00034661:AgNPs_downregulatedGenes downregulated more than 2 fold after 24 hours of AgNPs exposure.
    WBPaper00057288:iff-1(RNAi)_downregulated_transcriptTranscripts that showed significantly decreased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
    WBPaper00051245:cytoplasm_specificProteins specifically expressed in cytoplasm, according to tissue specific APX enzyme expression driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -45h timepoint (3 hours after the first UVC dose).
    WBPaper00037950:AVA-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00055049:S.gordonii_upregulatedTranscripts that showed significantly increased expression after L4 larva animals were exposed to wild type S. gordonii for 2-3 hours, comparing to animals exposed to S. gordonii delta-spxB.
    WBPaper00050990:arcade_intestinal-valve_expressedTranscripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging.
    WBPaper00049626:UNC-75_targetmRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
    WBPaper00053236:Starvation_regulated_N2Genes that showed significantly changed expression by starvation for 2-4 hours after hatch, by comparing N2 starved and N2 fed animals at L1 larva.
    WBPaper00050990:seam_expressedTranscripts expressed in seam cells, according to PAT-Seq analysis using Pgrd-10-GFP-3XFLAG mRNA tagging.
    WBPaper00045521:Gender_NeutralGenes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
    cgc4489_group_24Genome-wide analysis of developmental and sex-regulated gene expression profile.
    WBPaper00053289:DREAM-targetTranscripts with promoter regions binding DREAM protein complex, according to ChIP-seq of E2F-DP (DPL-1 and EFL-1) and MuvB (LIN-9, LIN-37, LIN-52, and LIN-54) of N2 late embryo.
    WBPaper00049018:SWSN-2.2_interactingProteins associated with SWSN-2.2 in young adult stage, according to co-immunoprecipitation with anti-SWSN-2.2 antibody and mass spectrometry analysis.
    WBPaper00053184:sma-2(rax5)_downregulatedTranscripts that showed significantly decreased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20CTranscripts that showed differential expression in adult N2 vs adult mir-34(gk437) animals at 20C.
    WBPaper00051245:pharyngeal-muscle_cytoplasm_expressedProteins expressed in pharyngeal muscle cytoplasm, according to tissue specific APX enzyme expression using myo-2 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00053388:dauer_regulated_Cluster5Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 5 genes decreased expression after dauer commitment.
    WBPaper00058598:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
    WBPaper00053236:Starvation_regulated_GR1307Genes that showed significantly changed expression by starvation for 2-4 hours after hatch, by comparing GR1307[daf-16(mgDf50)] starved and GR1307[daf-16(mgDf50)] fed animals at L1 larva.
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq.
    WBPaper00027758:Regulated_genes_not_in_groupGenes whose expression is either up- or downregulated in efl-1, dpl-1 or lin-35 mutants relative to controls.
    WBPaper00045420:fertilization_downregulated_RNAseqmRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
    WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
    WBPaper00045774:clk-1_downregulatedDown-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.
    WBPaper00045263:0.1mM-paraquat_upregulatedTranscripts with significantly increased expression after treatment with 0.1mM paraquat vs. control
    WBPaper00055971:nhl-2(ok818)_25C_upregulatedTranscripts that showed significantly decreased expression in nhl-2(ok818) comparing to in N2 at 25C.
    WBPaper00035905:FBF-1_AssociatedFBF-associated probe sets (FDR <2.25%)
    WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
    WBPaper00051245:intestine_cytoplasm_expressedProteins expressed in intestine cytoplasm, according to tissue specific APX enzyme expression using spp-5 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00031832:slr-2_regulatedA complete list of the genes that showed differential expression in a slr-2 mutant strain.
    WBPaper00053184:sma-4(rax3)_downregulatedTranscripts that showed significantly decreased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    cgc4489_group_13Genome-wide analysis of developmental and sex-regulated gene expression profile.
    WBPaper00046161:Q40-aggregate-protein_Day7_Sarcosyl-insolubleProteins that co-aggregated with Q40-YFP in day 7 adults that were sarcosyl-insoluble.
    WBPaper00054493:hpl-2(tm1489)_upregulatedTranscripts that showed significantly increased expression in hpl-2(tm1489) comparing to in N2 animals.
    WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
    WBPaper00037611:RNP-8-associatedRNP-8-associated transcripts, based on microarray experiments.
    WBPaper00031184:acrylamide_upregulatedGenes with more than 2 fold increase of expression after 500 mg/l acrylamide treatment comparing with control.
    WBPaper00042274:tbx-2(bx59)_downregulatedGenes with decreased expression in tbx-2(bx59) comparing to N2.
    WBPaper00038118:aak-2(gt33)_upregulatedSignificantly up-regulated genes in unstressed aak-2(gt33) relative to N2.
    WBPaper00050990:hypodermis_expressedTranscripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging.
    WBPaper00052884:emb-4(hc60)_downregulatedTranscripts that showed significantly decreased expression in emb-4(hc60) comparing to in N2.
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 6h), according to RNAseq.
    WBPaper00036375:enriched_in_PVD_OLLGenes with expression enriched in PVD and OLL neurons. Data sets were normalized by RMA and transcripts showing relative PVD enrichment (>= 1.5X) vs. the reference sample were identified by SAM analysis (False Discovery Rate, FDR < 1%).
    WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 12h), according to RNAseq.
    WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
    WBPaper00050990:intestine_expressedTranscripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging.
    WBPaper00050234:lin-28(RNAi)_upregulatedTranscripts that showed significantly increased expression in lin-28(RNAi) animals comparing to in control animals.
    WBPaper00050488:20C_vs_25C_regulated_N2_adultTranscripts that showed differential expression in 20C vs 25C in N2 animals at adult stage.
    WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
    WBPaper00050990:body-muscle_expressedTranscripts expressed in body muscle, according to PAT-Seq analysis using Pmyo-3-GFP-3XFLAG mRNA tagging.
    WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
    WBPaper00045316:prg-1_upregulated_L1Protein coding genes with increased expression in prg-1(wm161) comparing to in N2.
    WBPaper00050344:AFD-neuron_enrichedTranscripts that showed significantly increased expression in AFD neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis.
    WBPaper00045316:prg-1_upregulated_L3Protein coding genes with increased expression in prg-1(wm161) comparing to in N2.
    WBPaper00049217:DAF-16_upregulatedTranscripts that showed significantly increased expression by DAF-16 by comparing glp-1(e2141ts) with daf-16(mu86);glp-1(e2141ts) animals.
    WBPaper00051245:epidermis_nucleus_expressedProteins expressed in epidermis nucleus, according to tissue specific APX enzyme expression using dpy-7 promoter driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00058958:100mGy-irradiation-72h_upregulatedTranscripts that showed significantly increased expression after exposure to 100mGy per hour gamma irradiation from L1 to day 1 adult hermaphrodite stage.
    WBPaper00051245:epidermis_cytoplasm_expressedProteins expressed in epidermis cytoplasm, according to tissue specific APX enzyme expression using dpy-7 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    [cgc6390]:spermatogenesis-enrichedspermatogenesis-enriched
    WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
    WBPaper00053615:SMO-1_targetProteins that were modified by SUMO (smo-1). Using the strain RU86[smo-1(ok359); Is(psmo-1::smo-1gfp::3'UTRsmo-1] expressing HIS-GFP tagged SUMO, authors set up the purification of proteins modified by SUMO using immobilized metal ion affinity chromatography (IMAC).
    WBPaper00055334:DLC-1_interactingTranscripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
    WBPaper00040412:germline-regulated_daf-16_targetGenes that were regulated by DAF-16 in response to germline loss, identified by comparing differentially expression genes between glp-1(e2141ts, 25C) vs. glp-1(e2141ts, 20C) and daf-16;glp-1(e2141ts, 25C) vs. daf-16;glp-1(e2141ts, 20C).
    Microarray, Tiling Array and RNAseq:
    Microarray "topography map" data:
    Site of Action:
    Loading...Loading FPKM expression data...