Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Expressed during:
Subcellular localization:
Cellular component Supporting evidence
endoplasmic reticulum
Expr14263
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Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1039602Tiling array
Tiling arrays expression graphs...
details
Wormviz
Expr1026901Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
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Expr1160883Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Anatomy terms:
4D expression movies:
    Expression Cluster:
    Expression clusters Description
    WBPaper00053184:sma-2(rax5)_downregulatedTranscripts that showed significantly decreased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00053388:dauer_regulated_Cluster3Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 3 genes increased expression transiently at 26 hour post hatching.
    WBPaper00060084:cco-1(RNAi)_downregulated_N2Transcripts that showed significantly decreased expression in cco-1(RNAi) animals comparing to N2 animals injected with empty vector.
    WBPaper00051245:intestine_cytoplasm_expressedProteins expressed in intestine cytoplasm, according to tissue specific APX enzyme expression using spp-5 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00037950:hypodermis_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00053184:sma-4(rax3)_downregulatedTranscripts that showed significantly decreased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00025141:N2_Expressed_GenesGenes expressed in N2.
    WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20CTranscripts that showed differential expression in dauer mir-34(gk437) vs dauer mir-34(OverExpression) animals at 20C.
    WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
    WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)Transcripts that showed significantly decreased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
    [cgc5767]:expression_class_MMaternal class (M): genes that are called present in at least one of the three PC6 replicates.
    WBPaper00051558:aging_regulatedTranscripts that showed significantly changed expression in 6-day post-L4 adult hermaphrodite comparing to in 1-day post L4 adult hermaphrodite animals.
    WBPaper00051245:pharyngeal-muscle_cytoplasm_expressedProteins expressed in pharyngeal muscle cytoplasm, according to tissue specific APX enzyme expression using myo-2 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00037950:A-class-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
    WBPaper00059605:MUT-16_interactingProteins that physically interact with MUT-16 according to MUT-16-GFP-3xFLAG immunoprecipitation.
    WBPaper00044501:gld-1_let-7_regulatedProteins that showed differential expression in (B) let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge], and in (C) gld-1(op236); let-7(mg279);[let-7 sponge] when comparing to (A) [let-7 sponge]
    WBPaper00037950:A-class-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00037950:pharyngeal-muscle_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00038213:LF82_72h_upregulatedProteins whose abundance increased more than 1.5-fold, after 72 h of infection with bacteria LF82.
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq.
    WBPaper00040965:lipid-droplet_associated_proteinProteins associated with lipid droplets, according to proteomics study.
    WBPaper00048989:N2_allantoin_upregulatedGenes from N2 animals with significantly increased expression after 72 hours of treatment on growth media with 250uM allantoin in 2% DMSO.
    WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
    WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20CTranscripts that showed differential expression in dauer N2 vs dauer mir-34(gk437) animals at 20C.
    WBPaper00037950:germline-precursors_blastula-embryo_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 0hr reference).
    WBPaper00005700:transmembrane_proteinProteins identified in insoluble fractions after mixed stage C. elegans cells were lysed by sonication and separated with ultracentrifugation.
    WBPaper00050698:DEP-1_interactProteins physically interacting with DEP-1, identified by GST pull-down of intracellular domains (WT and D1241A) of DEP-1, followed by LC-MS-MS.
    WBPaper00037950:excretory-cell_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00057288:iff-1(RNAi)_downregulated_transcriptTranscripts that showed significantly decreased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
    WBPaper00036123:Fluoranthene_regulatedGenes that showed significant differential expressed between control and 1000 mg\/L Fluoranthene treatment.
    WBPaper00056471:S.aureus-4h_downregulated_N2Transcripts that showed significantly decreased expression after N2 animals had 4 hours of infection by Staphylococcus aureus (MW2).
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 6h), according to RNAseq.
    WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00051245:cytoplasm_specificProteins specifically expressed in cytoplasm, according to tissue specific APX enzyme expression driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00041606:CE_B.thuringiensis-DB27_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Bacillus thurigiensis DB27.
    WBPaper00048923:Aging_regulatedGenes that showed differential expression in Day 1, 10 and 20 adult stages.
    WBPaper00040446:insoluble_proteinInsoluable proteins isolated from day 1 to day 11 old adults of TJ1060 [spe-9(hc88)I; fer-15(b26)II] using liquid chromatography and mass spetrometry
    WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
    WBPaper00055226:ADR-2_target_N2Genes that exhibit a differential enrichment (p-value < 0.05 and a fold enrichment (log2fold)> 0.5) between the ADR-2 IPs from N2 and adr-2(ok735)worms.
    WBPaper00041174:environmental_primeGenes with significant variation in expression level only across environments(control, 25C, High-pH-Salt, Liquid, infection), but no genotypic variation (AB2, CB4856, RC301, CB4857, N2, HC445).
    WBPaper00045521:Gender_NeutralGenes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
    WBPaper00048989:eat-2(ad465)_rapamycin_upregulatedGenes from eat-2(ad465) animals with significantly increased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO.
    WBPaper00050990:body-muscle_expressedTranscripts expressed in body muscle, according to PAT-Seq analysis using Pmyo-3-GFP-3XFLAG mRNA tagging.
    WBPaper00055648:germline_expressedTranscripts expressed in germline, according to RNA tomography.
    WBPaper00041174:environmentalGenes with variation in expression level across conditions (control, 25C, High-pH-Salt, Liquid, infection).
    WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
    WBPaper00035073:mitochondria_proteinProteins expressed in C. elegans mitochondria, according to 2D-LC-MS-MS.
    WBPaper00041606:CE_X.nematophila_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila.
    WBPaper00050801:DPY-21_dauer_regulomeGenes regulated by DPY-21, according to whole transcriptome profiling to compare genome-wide regulatory influences of DPY-21 and SET-4 to those of the key transcription factors controlling dauer arrest in eak-7;akt-1 animals, DAF-16 and DAF-12.
    WBPaper00056139:soil-microbiota_downregulatedTranscripts that showed significantly decreased expression after L1 larva grew on soil microbiota at 25C for 3 days.
    WBPaper00045420:fertilization_downregulated_RNAseqmRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
    WBPaper00050990:arcade_intestinal-valve_expressedTranscripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging.
    WBPaper00053814:25C_downregulated_OP50Transcripts that are significantly downregulated at 25C compared to both 15C and 20C, with no statistical difference between 15C and 20C, in worms feeding E. coli OP50.
    WBPaper00038118:aak-2(gt33)_upregulatedSignificantly up-regulated genes in unstressed aak-2(gt33) relative to N2.
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 12h), according to RNAseq.
    WBPaper00050990:intestine_expressedTranscripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging.
    WBPaper00033065:cyc-1(RNAi)_downregulatedSignificantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
    WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulatedTranscripts that showed significantly decreased expression in sur-5p::jmjd-1.2 comparing to in N2.
    WBPaper00055971:nhl-2(ok818)_25C_upregulatedTranscripts that showed significantly decreased expression in nhl-2(ok818) comparing to in N2 at 25C.
    WBPaper00049545:jmjd-3.1(+)_downregulatedTranscripts that showed significantly decreased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
    WBPaper00036123:Cadmium_regulatedGenes that showed significant differential expressed between control and 20 mg\/L Cadmium treatment.
    WBPaper00051245:body-wall-muscle_cytoplasm_expressedProteins expressed in body wall muscle cytoplasm, according to tissue specific APX enzyme expression using myo-3 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00053810:isp-1(qm150)_downregulatedTranscripts that showed significantly decreased expression in isp-1(qm150) comparing to in N2.
    WBPaper00051245:epidermis_nucleus_expressedProteins expressed in epidermis nucleus, according to tissue specific APX enzyme expression using dpy-7 promoter driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00051245:epidermis_cytoplasm_expressedProteins expressed in epidermis cytoplasm, according to tissue specific APX enzyme expression using dpy-7 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00053615:SMO-1_targetProteins that were modified by SUMO (smo-1). Using the strain RU86[smo-1(ok359); Is(psmo-1::smo-1gfp::3'UTRsmo-1] expressing HIS-GFP tagged SUMO, authors set up the purification of proteins modified by SUMO using immobilized metal ion affinity chromatography (IMAC).
    WBPaper00037950:coelomocytes_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00038289:oocyte_proteinoocyte proteins identified by two or more unique peptides during proteomics study.
    WBPaper00024671:AFD_AWB_vs_unsorted_upregulatedGenes predicted to be upregulated more than 2.0 fold in (AFD+AWB) datasets as compared to unsorted whole embryonic cells dataset.
    WBPaper00037950:coelomocytes_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00050990:pharynx_expressedTranscripts expressed in pharynx, according to PAT-Seq analysis using Pmyo-2-GFP-3XFLAG mRNA tagging.
    WBPaper00037950:hypodermis_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00037950:intestine_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 6h), according to RNAseq.
    WBPaper00050990:hypodermis_expressedTranscripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging.
    [cgc5767]:expression_class_SMStrictly maternal class (SM): genes that are the subset of maternal genes that are not also classified as embryonic.
    Microarray, Tiling Array and RNAseq:
    Microarray "topography map" data:
    Site of Action:
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