Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
intestine
tail
head
pharynx
NSM
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
details
AVK
WBPaper00055565:AVK_enriched
details
germ line
WBPaper00051039:germline_enriched
details
Expressed during:
Life stage Supporting evidence
larva Ce
Expr5364
details
adult Ce
Expr5364
details
all stages Ce
Expr12984
details
Subcellular localization:
Cellular component Supporting evidence
nucleus
Expr12984
details
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1036924Tiling array
Tiling arrays expression graphs...
details
Wormviz
Expr1145408Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1010488Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Anatomy terms:
4D expression movies:
    Expression Cluster:
    Expression clusters Description
    WBPaper00053184:sma-2(rax5)_downregulatedTranscripts that showed significantly decreased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00050370:dpy-21(e428)_L3_downregulatedTranscripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.
    WBPaper00037695:WC_5-dayTranscripts that cycle in warm/cold (WC) condition but not in constant cold (CC) condition (pF24<0.02).
    WBPaper00053184:sma-4(rax3)_downregulatedTranscripts that showed significantly decreased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulatedTranscripts that showed significantly decreased expression in rpl-5(cc5998) vs wild type (PD1074) and rpl-33(cc2558) vs wild type (PD1074) animals.
    WBPaper00053302:alovudine_72h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to stavudine (FLT) starting at L1 lava stage.
    WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
    [cgc5767]:expression_class_MMaternal class (M): genes that are called present in at least one of the three PC6 replicates.
    WBPaper00031003:total_muscle_depletedTotal muscle depleted genes (complete list of non-overlapping genes from the 0hr and 24hr muscle depleted datasets).
    WBPaper00055435:AuNPs_downregulatedTranscripts that showed significantly decreased expression after synchronized L1 larva stage animals were exposed to bare Au NPs (gold nanoparticles) for 72 hours.
    WBPaper00037950:A-class-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00026980:intestine_enrichedGenes enriched in intestine.
    WBPaper00058691:CFP-1_interacting_proteinProteins that interact with CFP-1::GFP according to immunoprecipitation followed with mass-spectrometry-based proteomics studies.
    WBPaper00058958:100mGy-irradiation-72h_upregulatedTranscripts that showed significantly increased expression after exposure to 100mGy per hour gamma irradiation from L1 to day 1 adult hermaphrodite stage.
    WBPaper00035905:FBF-1_AssociatedFBF-associated probe sets (FDR <2.25%)
    [cgc5767]:cluster_4Early embryonic development gene expression profile.
    WBPaper00046509:htz-1(ok3099)_downregulatedmRNAs that showed significantly decreased expression in htz-1(ok3099) comparing to in N2.
    WBPaper00060100:SiNP_upregulated_mRNATranscripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).
    WBPaper00057288:iff-1(RNAi)_downregulated_transcriptTranscripts that showed significantly decreased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
    WBPaper00031832:slr-2_regulatedA complete list of the genes that showed differential expression in a slr-2 mutant strain.
    WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00045521:Gender_NeutralGenes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
    WBPaper00052884:emb-4(hc60)_downregulatedTranscripts that showed significantly decreased expression in emb-4(hc60) comparing to in N2.
    WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
    WBPaper00045263:nuo-6(qm200)_downregulatedTranscripts with significantly decreased expression in nuo-6(qm200) vs. N2, and in nuo-6(qm200);ced-4(n1162) vs. ced-4(n1162).
    WBPaper00041606:CE_X.nematophila_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila.
    WBPaper00060358:B.thuringiensis_pathogen_regulated_N2Transcripts in N2 animals that were significantly differentially expressed at least for one time point and one pathogenic strain Bt247 and Bt679 compared to the non pathogenic strain Bt407.
    WBPaper00056139:soil-microbiota_downregulatedTranscripts that showed significantly decreased expression after L1 larva grew on soil microbiota at 25C for 3 days.
    WBPaper00060459:bcat-1(RNAi)_downregulatedTranscripts that showed significantly decreased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
    WBPaper00040221:DAF-12_target_ALF4Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12
    WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
    WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
    WBPaper00036286:Pattern_GExpression Pattern Group G, enriched for genes involved in locomotion.
    WBPaper00032165:differentially_expressed_with_age_medoid_1Differentially expressed genes during worm lifespan. Medoid 1 Fig.4.
    WBPaper00051245:body-wall-muscle_nucleus_expressedProteins expressed in body wall muscle nucleus, according to tissue specific APX enzyme expression using myo-3 promoter driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00045420:fertilization_downregulated_RNAseqmRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
    WBPaper00059356:BAZ-2_SET-6_interactingTranscripts that interact with both BAZ-2 and SET-6 in Chip-Seq analysis.
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 12h), according to RNAseq.
    WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulatedTranscripts that showed significantly decreased expression in sur-5p::jmjd-1.2 comparing to in N2.
    WBPaper00036123:Cadmium_regulatedGenes that showed significant differential expressed between control and 20 mg\/L Cadmium treatment.
    WBPaper00051245:body-wall-muscle_cytoplasm_expressedProteins expressed in body wall muscle cytoplasm, according to tissue specific APX enzyme expression using myo-3 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -25h timepoint (just prior to the second UVC dose (24h)).
    WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassIITranscripts that did not alter expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, but their mRNAs co-purify with SMG-2.
    WBPaper00037950:bodywall-muscle_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00053810:isp-1(qm150)_downregulatedTranscripts that showed significantly decreased expression in isp-1(qm150) comparing to in N2.
    WBPaper00053810:nuo-6(qm200)_downregulatedTranscripts that showed significantly decreased expression in nuo-6(qm200) comparing to in N2.
    WBPaper00053289:DREAM-targetTranscripts with promoter regions binding DREAM protein complex, according to ChIP-seq of E2F-DP (DPL-1 and EFL-1) and MuvB (LIN-9, LIN-37, LIN-52, and LIN-54) of N2 late embryo.
    WBPaper00050412:cco-1(RNAi)_downregulated_N2Transcripts that showed significantly decreased expression in cco-1(RNAi) comaring to control(RNAi) in N2 animals.
    WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 6h), according to RNAseq.
    WBPaper00044037:eat-2_downregulatedGenes with significantly decreased expression in eat-2(ad465) comparing to N2.
    WBPaper00049545:cco-1(RNAi)_downregulatedTranscripts that showed significantly decreased expression in cco-1(RNAi) comparing to in control animals.
    WBPaper00051245:intestine_cytoplasm_expressedProteins expressed in intestine cytoplasm, according to tissue specific APX enzyme expression using spp-5 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00025032:cluster_13C-lineage related expression profile.
    WBPaper00025032:cluster_7C-lineage related expression profile.
    WBPaper00025141:N2_Expressed_GenesGenes expressed in N2.
    [cgc5767]:expression_class_E_pi(23_min)Embryonic (E) subclasses are based on the earliest significant increase(abbreviated pi for primary increase).
    cgc4386_cluster_6_3Developmentally modulated gene cluster.
    WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)Transcripts that showed significantly decreased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
    WBPaper00055565:AVK_enrichedTranscripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
    [cgc5767]:expression_class_MEMaternal-embryonic class (ME): genes that are in the intersection of the maternal and embryonic classes.
    WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
    WBPaper00044656:tatn-1(qd182)_downregulatedGenes identified as down-regulated at a 5% false discovery rate through RNAseq experiments with three tatn-1(qd182) and three N2 RNA samples.
    WBPaper00037950:pharyngeal-muscle_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00027111:rde-3(ne298)_upregulatedGenes predicted to be upregulated more than 2.0 fold in rde-3(ne298) mutant worms as compared to wild-type animals (t-test P-value < 0.05).
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq.
    WBPaper00045974:NSM_enriched_totalRNA_RNAseqGenes significantly enriched in NSM neurons (isolated by FACS) versus the reference, according to RNAseq analysis towards total RNA.
    WBPaper00041606:CE_S.marcescens_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Serratia marcescens.
    WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
    WBPaper00031003:0hr_muscle_depletedGenes depleted in muscle cells (0hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 0 hours before FACS sorting.
    [cgc5767]:expression_class_EEmbryonic class (E): genes that significantly increase in abundance at some point during embryogenesis.
    WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 6h), according to RNAseq.
    WBPaper00051245:nucleus_specificProteins specifically expressed in nucleus, according to tissue specific APX enzyme expression driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00041606:CE_B.thuringiensis-DB27_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Bacillus thurigiensis DB27.
    WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
    WBPaper00059471:EGL-43_interactingTranscripts that interact with endogenous EGL-43-GFP at L3 larva stage according to CHIP-Seq analysis.
    WBPaper00033065:isp-1-1(qm150)_upregulatedSignificantly upregulated genes from isp-1(qm150) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
    WBPaper00042274:tbx-2(bx59)_downregulatedGenes with decreased expression in tbx-2(bx59) comparing to N2.
    WBPaper00037950:all-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00052987:UV_upregulated_xpc-1\;csb-1Proteins significantly (FDR < 5%) increased in abundance in UV-treated versus untreated BJS21 xpc-1(tm3886);csb-1(ok2335) double mutants
    WBPaper00055648:germline_expressedTranscripts expressed in germline, according to RNA tomography.
    WBPaper00042331:a-SWCNTs_downregulatedGenes downregulated (fold changes < 2-fold) in the worms following exposure of a-SWCNTs (500 mg\/mL) for 48 hr.
    cgc4489_group_8Genome-wide analysis of developmental and sex-regulated gene expression profile.
    WBPaper00057288:Cold_downregulated_transcriptTranscripts that showed significantly decreased expression in N2 animals treated with empty RNAi vector at 15C comparing to N2 animals treated with empty RNAi vector at 20C.
    WBPaper00051039:germline_enrichedTranscripts enriched in germline by comparing dissected germline tissue with dissected intestine tissue, both injected with empty RNAi vector.
    WBPaper00051245:intestine_nucleus_expressedProteins expressed in intestine nucleus, according to tissue specific APX enzyme expression using spp-5 promoter driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00026929:Resveratrol_regulated_daf-16Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01.
    WBPaper00041939:control_vs_EtBr-exposed_48hGenes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
    WBPaper00050990:intestine_expressedTranscripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging.
    WBPaper00049545:jmjd-3.1(+)_downregulatedTranscripts that showed significantly decreased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
    WBPaper00055971:nhl-2(ok818)_25C_upregulatedTranscripts that showed significantly decreased expression in nhl-2(ok818) comparing to in N2 at 25C.
    WBPaper00038438:Harposporium_24hr_downregulated_RNAseqGenes with decreased expression after 24 hours of infection by Harposporium Fold changes shown are pathogen vs OP50.
    WBPaper00026929:sir-2.1_overexpression_regulatedGenes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.
    WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00051245:epidermis_nucleus_expressedProteins expressed in epidermis nucleus, according to tissue specific APX enzyme expression using dpy-7 promoter driven NLS(nucleus)-GFP-APX, followed with mass spectrometry.
    WBPaper00051245:epidermis_cytoplasm_expressedProteins expressed in epidermis cytoplasm, according to tissue specific APX enzyme expression using dpy-7 promoter driven NES(cytoplasm)-GFP-APX, followed with mass spectrometry.
    WBPaper00055354:Rapamycin-Metformin_upregulatedTranscripts that showed significantly increased expression after animals were treated with 100uM Rapamycin and 50mM Metformin from day 1 to day 3 adult hermaphradite.
    WBPaper00050990:hypodermis_expressedTranscripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging.
    Microarray, Tiling Array and RNAseq:
    Microarray "topography map" data:
    Site of Action:
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