Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
neuron
  • WBPaper00037950:all-neurons_embryo_enriched
    details
  • WBPaper00031532:Larva_Pan_Neuronal_Enriched
    details
sensory neuron
WBPaper00060661:sensory-neuron_enriched
details
Expressed during:
Subcellular localization:
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1033935Tiling array
Tiling arrays expression graphs...
details
Wormviz
Expr1149171Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1026698Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Anatomy terms:
4D expression movies:
    Expression Cluster:
    Expression clusters Description
    WBPaper00026929:Resveratrol_regulated_daf-16Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01.
    WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00060661:sensory-neuron_enrichedTranscripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
    WBPaper00055334:DLC-1_interactingTranscripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
    WBPaper00056855:his-72(uge40)_downregulatedTranscripts that showed significantly decreased expression in FAS58[his-72(uge40)] comparing to in N2.
    WBPaper00025141:N2_Expressed_GenesGenes expressed in N2.
    WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adultTranscripts that showed differential expression in 20C vs 25C in mir-34(OverExpression) animals at adult stage.
    WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
    WBPaper00046805:csr-1(RNAi)_downregulated_Set1mRNAs that showed decreased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 1 transcripts were defined as P-value < 0.05 and fold change > 1.9.
    WBPaper00057288:iff-1(RNAi)_downregulated_transcriptTranscripts that showed significantly decreased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
    WBPaper00037950:dopaminergic-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
    WBPaper00041606:CE_X.nematophila_regulatedCaenorhabditis elegans Genes with expression levels changed significantly after treatment of Xenorhabdus nematophila.
    WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00061203:sin-3(tm1276)_upregulatedTranscripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2.
    WBPaper00053302:stavudine_24h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to stavudine (d4T) starting at L1 lava stage.
    WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00037950:bodywall-muscle_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00046509:htz-1(ok3099)_downregulatedmRNAs that showed significantly decreased expression in htz-1(ok3099) comparing to in N2.
    WBPaper00037950:all-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00037950:AVA-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00055354:Rifampicin_upregulatedTranscripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite.
    WBPaper00031532:Larva_Pan_Neuronal_EnrichedWT-Pico Pan-neural Enriched Genes, with genes found multiple times in a single dataset removed (without dups).
    WBPaper00037950:CEP-sheath-cells_Day1-adult_expressedGenes that showed expression levels higher than the corresponding reference sample (Young adult all cell reference).
    WBPaper00037950:BAG-neuron_blastula-embryo_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 0hr reference).
    WBPaper00053388:dauer_regulated_Cluster1Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. The expression levels of Cluster 1 gradually decreased into dauer.
    WBPaper00045263:isp-1(qm150)_upregulatedTranscripts with significantly increased expression in isp-1(qm150) vs. N2, and in isp-1(qm150) ced-4(n1162) vs. ced-4(n1162).
    WBPaper00037950:A-class-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00055354:Rapamycin-Rifampicin_upregulatedTranscripts that showed significantly increased expression after animals were treated with 100uM Rapamycin and 50uM Rifampicin from day 1 to day 3 adult hermaphradite.
    WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseqTranscripts that showed significantly increased expression in nos-1(gv5)nos-2(RNAi) comparing to in wild type, in primordial germ cells (PGCs) at L1 larva, according to SMARTseq.
    WBPaper00045521:OogenicGenes that were enriched in oogenic fog-2(q71) gonads comparing to in spermatogenic fem-3(q96gf), according to RNAseq analysis.
    WBPaper00055354:Rifampicin-Psora_upregulatedTranscripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite.
    [cgc5767]:expression_class_MMaternal class (M): genes that are called present in at least one of the three PC6 replicates.
    WBPaper00056868:P.aeruginosa_upregulated_smallRNASmall RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.
    WBPaper00040823:alg-1(gk214)_downregulatedGenes down regulated in alg-1(gk214) comparing to in N2.
    WBPaper00053321:PGCs_depleted_NuGenTranscripts that were depleted in embryonic primordial germ cells (PGCs) comparing to in whole embryo, according to NuGen RNAseq.
    WBPaper00053295:lin-22(icb38)_upregulatedTranscripts that showed significantly increased expression in lin-22(icb38) comparing to in N2 at L3 larva.
    WBPaper00058691:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo stage.
    WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
    WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulatedTranscripts that showed significantly increased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
    WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_TruseqTranscripts that showed significantly increased expression in fed nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00037950:all-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00058691:cfp-1(tm6369)_downregulatedTranscripts that showed significantly decreased expression in cfp-1(tm6369) comparing to in N2 at early embryo stage.
    WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_TruseqTranscripts that showed significantly increased expression in fed mes-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00037950:all-neurons_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00041939:control_vs_EtBr-exposed_48hGenes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
    WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_TruseqTranscripts that showed significantly increased expression in starved nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
    WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_TruseqTranscripts that showed significantly increased expression in fed mes-4(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00058598:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
    WBPaper00048989:eat-2(ad465)_rapamycin_downregulatedGenes from eat-2(ad465) animals with significantly decreased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO.
    WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
    WBPaper00045263:0.1mM-paraquat_upregulatedTranscripts with significantly increased expression after treatment with 0.1mM paraquat vs. control
    WBPaper00061527:F08G12.1_2283-cst-1_319Coexpression clique No. 98, F08G12.1_2283-cst-1_319, on the genome-wide coexpression clique map for the nematode GPL200 platform.
    WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
    WBPaper00048989:N2_rapamycin_downregulatedGenes from N2 animals with significantly decreased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO.
    WBPaper00037950:AVE-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00031003:hlh_1_enrichedGenes enriched in HLH-1 heat shock dataset.
    WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adultTranscripts that showed differential expression in 20C vs 25C in mir-34(gk437) animals at adult stage.
    WBPaper00048989:N2_allantoin_upregulatedGenes from N2 animals with significantly increased expression after 72 hours of treatment on growth media with 250uM allantoin in 2% DMSO.
    WBPaper00053599:female_vs_male_upregulatedTranscripts that showed significantly increased expression in dissected female germline comparing to in dissected male germline.
    WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)Transcripts that showed significantly decreased expression in hyl-2(tm2031) fed with glucose diet, comparing to in hyl-2(tm2031) when fed with OP50 only diet.
    WBPaper00050488:20C_vs_25C_regulated_N2_adultTranscripts that showed differential expression in 20C vs 25C in N2 animals at adult stage.
    WBPaper00053599:oocyte_vs_mitosis_downregulatedTranscripts that showed significantly decreased expression in oocyte germline cells comparing to in mitosis germline cells.
    WBPaper00030985:Photorhabdus_luminescens_upregulatedGenes up-regulated in animals infected with Photorhabdus luminescens compared to the E. coli OP50 control after 24h of infection.
    WBPaper00061341:28C_48h_downregulatedTranscripts that showed significantly decreased expression after animals were exposed to 28C temperature for 48 hours.
    WBPaper00037950:hypodermis_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00059328:mrps-5(RNAi)_upregulated_mRNATranscripts that showed significantly increased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.
    [cgc5767]:expression_class_SMStrictly maternal class (SM): genes that are the subset of maternal genes that are not also classified as embryonic.
    WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq.
    WBPaper00037950:excretory-cell_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00053814:25C_downregulated_PY79Transcripts that are significantly downregulated at 25C compared to both 15C and 20C, with no statistical difference between 15C and 20C, in worms feeding B. subtilis PY79.
    WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
    WBPaper00037950:coelomocytes_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3hGenes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -45h timepoint (3 hours after the first UVC dose).
    WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 12h), according to RNAseq.
    WBPaper00056443:sek-1(km4)_upregulatedTranscripts that showed significantly increased expression in sek-1(km4) animals comparing to in N2 animals under both dietary (DR, OP50 OD = 0.1) and ad libtum (AL, OP50 OD = 3) conditions from 3-day post L4 till 6-day post L4 adult hermaphrodite stage.
    WBPaper00037950:hypodermis_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00056471:aak-1(tm1944)\;aak-2(ok524)_upregulatedTranscripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2.
    WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulatedGenes with differential expression under 0.5mg/l Chlorpyrifos (CPF) and 0.5mg/l Diazinon (DZN) treatment at 24 centigrade.
    Microarray, Tiling Array and RNAseq:
    Microarray "topography map" data:
    Site of Action:
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