Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
neuron
RIS
WBPaper00058969:RIS_enriched
details
Expressed during:
Subcellular localization:
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1148853Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1023602Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Anatomy terms:
4D expression movies:
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Expression Cluster:
Expression clusters Description
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00056167:Cry5B_upregulatedTranscripts that showed significantly increased expression in animals fed with JM103 bacteria producing Cry5B, comparing to control animals fed with JM103.
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseqGenes with decreased expression after 12 hours of infection by D.coniospora Fold changes shown are pathogen vs OP50.
WBPaper00053295:lin-22(ot269)_upregulatedTranscripts that showed significantly increased expression in lin-22(ot269) comparing to in N2 at L3 larva.
WBPaper00034661:AgNPs_downregulatedGenes downregulated more than 2 fold after 24 hours of AgNPs exposure.
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20CTranscripts that showed differential expression in dauer mir-34(gk437) vs dauer mir-34(OverExpression) animals at 20C.
WBPaper00058969:RIS_enrichedTranscripts enriched in RIS neurons comparing to in all cells.
WBPaper00024671:AFD_AWB_vs_unsorted_upregulatedGenes predicted to be upregulated more than 2.0 fold in (AFD+AWB) datasets as compared to unsorted whole embryonic cells dataset.
WBPaper00042548:miRISC_enrichedGenes enriched in neuronal miRNA-induced silencing complexes (miRISC) as detected by immunoprecipitations and microarray analysis.
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00041939:control_vs_UVC-EtBr-exposed_48hGenes differentially expressed in control vs after UVC exposure and EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00031532:Larva_Pan_Neuronal_EnrichedWT-Pico Pan-neural Enriched Genes, with genes found multiple times in a single dataset removed (without dups).
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00030839:Embryo_Pan_NeuronalEmbryonic Pan-neural Enriched Genes.
WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
WBPaper00030839:Larval_Pan_NeuronalLarval Pan-neural Enriched Genes.
WBPaper00045960:L1-L4-lethargus_upregulatedGene transcripts in this set are in the L4-lethargus_upregulated gene set AND are also up-regulated at 30% FDR between 2-hour old embryos and 3-hour old L1 animals.
cgc4489_group_16Genome-wide analysis of developmental and sex-regulated gene expression profile.
WBPaper00033065:cyc-1(RNAi)_downregulatedSignificantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
WBPaper00032425:up_in_lin-35Genes with expression level up in lin-35 mutant background.
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51hGenes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00040876:mir-35_downregulatedGenes with expression level down regulated in mir-35 mutants comparing with N2.
WBPaper00031003:0hr_muscle_depletedGenes depleted in muscle cells (0hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 0 hours before FACS sorting.
WBPaper00050726:OsmoticStress_regulated_FoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
WBPaper00041939:control_vs_EtBr-exposed_48hGenes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
WBPaper00033101:spr-5_regulatedGenes regulated by spr-5 (greater than 2-fold change between spr-5(by101) generations 1, 13, and 26).
WBPaper00038427:lin-54_embryo_changedGenes with changed expression in lin-54(n2290) embryo.
WBPaper00034739:N2moreDR1350Genes that showed higher expression in N2 than in DR1350.
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20CTranscripts that showed differential expression in dauer N2 vs dauer mir-34(gk437) animals at 20C.
WBPaper00051558:aging_regulatedTranscripts that showed significantly changed expression in 6-day post-L4 adult hermaphrodite comparing to in 1-day post L4 adult hermaphrodite animals.
WBPaper00047070:N2_starvation_upregulatedGenes with significantly increased expression in N2 animals after 4 hours of starvation.
WBPaper00031003:total_muscle_depletedTotal muscle depleted genes (complete list of non-overlapping genes from the 0hr and 24hr muscle depleted datasets).
WBPaper00025141:N2_Expressed_GenesGenes expressed in N2.
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00047070:xpa-1_UV_downregulatedGenes with significantly decreased expression in xpa-1(ok698) animals after treated with 10mJ per square cm UV and harvested 6 hours later.
WBPaper00056443:sek-1(km4)_upregulatedTranscripts that showed significantly increased expression in sek-1(km4) animals comparing to in N2 animals under both dietary (DR, OP50 OD = 0.1) and ad libtum (AL, OP50 OD = 3) conditions from 3-day post L4 till 6-day post L4 adult hermaphrodite stage.
WBPaper00050488:20C_vs_25C_regulated_N2_adultTranscripts that showed differential expression in 20C vs 25C in N2 animals at adult stage.
WBPaper00045960:L4-lethargus_upregulatedGene transcripts in this set are up-regulated at 5% FDR between L4 lethargus and L4 AND between L4 lethargus and 4-hour old adults.
WBPaper00048971:daf-16(mgDf50)_downregulated_L1Transcripts that showed significantly decreased expression in daf-16(mgDf50) comparing to in N2 at L1 larva stage.
WBPaper00055354:Rapamycin-Rifampicin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin and 50uM Rifampicin from day 1 to day 3 adult hermaphradite.
WBPaper00027758:Group_IIIGenes with higher expression in one or more mutants of efl-1, dpl-1 and lin-35 relative to controls.
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulatedTranscripts that showed significantly increased expression in rpl-5(cc5998) vs wild type (PD1074) and rpl-33(cc2558) vs wild type (PD1074) animals.
WBPaper00031252:AIN-1_IP_enrichedmRNAs that were significantly enriched in the AIN-1 immunoprecipitation samples, compared to the control total mRNAs in the input extracts (p < 0.01).
Microarray, Tiling Array and RNAseq:
Microarray "topography map" data:
Site of Action:
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