Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
DA neuron
I5 neuron
WBPaper00025141:unc-4::GFP_Enriched_Genes
details
nerve ring
Expr2616
details
CEPshDR
WBPaper00056619:CEPsh_enriched
details
sensory neuron
WBPaper00060661:sensory-neuron_enriched
details
SDQR
Expr2616
details
pharyngeal muscle cell
Expr2616
details
neuron
body wall musculature
Expr11892
details
excretory canal
Expr11892
details
AFD
WBPaper00050344:AFD-neuron_enriched
details
DA9
WBPaper00061651:DA9_enriched
details
CEPshVL
WBPaper00056619:CEPsh_enriched
details
AVM
Expr2616
details
PLM
WBPaper00050344:PLM-neuron_enriched
details
SAB
WBPaper00025141:unc-4::GFP_Enriched_Genes
details
head mesodermal cell
WBPaper00056826:hmc_biased
details
head neuron
Expr6570
details
AWCL
  • Expr2616
    details
ventral cord neuron
Expr2616
details
PVD
WBPaper00036375:enriched_in_PVD_OLL
details
touch receptor neuron
Expr2616
details
DVB
Expr2616
details
CEPshDL
WBPaper00056619:CEPsh_enriched
details
OLL
WBPaper00036375:enriched_in_PVD_OLL
details
RIS
WBPaper00058969:RIS_enriched
details
AVK
WBPaper00055565:AVK_enriched
details
GABAergic neuron
WBPaper00024970:GABAergic_neuron_specific
details
SDQL
Expr2616
details
AWCR
  • Expr2616
    details
VA neuron
retrovesicular ganglion
WBPaper00025141:unc-4::GFP_Enriched_Genes
details
HSNR
Expr2616
details
RIA
WBPaper00061651:RIA_enriched
details
CEPshVR
WBPaper00056619:CEPsh_enriched
details
PVM
WBPaper00061651:PVM_enriched
details
nervous system
head
Expr6571
details
HSNL
Expr2616
details
Expressed during:
Life stage Supporting evidence
adult Ce
  • Expr6571
    details
  • Expr2616
    details
  • Expr6570
    details
L3 larva Ce
Expr2616
details
L1 larva Ce
Expr2616
details
fully-elongated embryo Ce
Expr2616
details
2-fold embryo Ce
Expr2616
details
larva Ce
3-fold embryo Ce
Expr2616
details
L2 larva Ce
Expr2616
details
1.5-fold embryo Ce
Expr2616
details
L4 larva Ce
Expr2616
details
Subcellular localization:
Cellular component Supporting evidence
axon
plasma membrane
dense body
Expr11892
details
presynapse
Expr13704
details
membrane
M band
Expr11892
details
presynaptic active zone membrane
neuronal cell body
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1021669Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Expr1032817Tiling array
Tiling arrays expression graphs...
details
Wormviz
Expr1155832Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Anatomy terms:
4D expression movies:
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Expression Cluster:
Expression clusters Description
WBPaper00042561:smgl-1(RNAi)_upregulatedGenes with significant increase of expression in NBAS smgl-1(RNAi) comparing to control.
WBPaper00027111:rde-3(ne298)_upregulatedGenes predicted to be upregulated more than 2.0 fold in rde-3(ne298) mutant worms as compared to wild-type animals (t-test P-value < 0.05).
WBPaper00053302:stavudine_24h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to stavudine (d4T) starting at L1 lava stage.
WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
WBPaper00056826:hmc_biasedTranscripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
WBPaper00027111:rde-3(r459)_upregulatedGenes predicted to be upregulated more than 2.0 fold in rde-3(r459) mutant worms as compared to wild-type animals (t-test P-value < 0.05).
WBPaper00056284:ints-5(RNAi)_upregulatedTranscripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2.
WBPaper00059471:EGL-43_interactingTranscripts that interact with endogenous EGL-43-GFP at L3 larva stage according to CHIP-Seq analysis.
WBPaper00061651:DA9_enrichedTranscripts enriched in DA9 according to single cell RNAseq.
WBPaper00042548:miRISC_enrichedGenes enriched in neuronal miRNA-induced silencing complexes (miRISC) as detected by immunoprecipitations and microarray analysis.
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2Genes down regulated in the absence of TDP-1, when the threshold was set at a fold change (FC) of 1.2.
WBPaper00024671:AFD_AWB_vs_unsorted_upregulatedGenes predicted to be upregulated more than 2.0 fold in (AFD+AWB) datasets as compared to unsorted whole embryonic cells dataset.
WBPaper00029437:dcr-1_upregulatedGenes upregulated in dcr-1(-/-) adult animals by at least 1.5 fold and P < 0.01, as determined by a multisample t-test and the Benjamini and Hochberg false discovery rate correction.
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00056034:pals-22(jy3)_upregulatedTranscripts that showed significantly increased expression in pals-22(jy3) comparing to in N2 at L4 larva stage.
WBPaper00041939:control_vs_UVC-EtBr-exposed_48hGenes differentially expressed in control vs after UVC exposure and EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00056169:rrf-3(pk1426)_upregulated_embryoTranscripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at embryo stage.
WBPaper00030839:Embryo_Pan_NeuronalEmbryonic Pan-neural Enriched Genes.
WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
WBPaper00030839:Embryo_A_ClassEmbryonic A-class motor neuron enriched genes.
WBPaper00058725:sftb-1(cer39)_downregulatedTranscripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.
WBPaper00050344:AFD-neuron_enrichedTranscripts that showed significantly increased expression in AFD neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis.
WBPaper00030839:Larval_Pan_NeuronalLarval Pan-neural Enriched Genes.
WBPaper00030839:Larval_A_ClassLarval A-class motor neuron enriched genes.
WBPaper00033065:cyc-1(RNAi)_downregulatedSignificantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
WBPaper00041939:control_vs_UVC-exposed_51hGenes differentially expressed in control vsafter UVC exposure without EtBr treatment, at the 3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00055354:Rifampicin-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
WBPaper00045316:prg-1_upregulated_L4Protein coding genes with increased expression in prg-1(wm161) comparing to in N2.
WBPaper00061651:PVM_enrichedTranscripts enriched in PVM according to single cell RNAseq.
cgc4386_cluster_6_5Developmentally modulated gene cluster.
WBPaper00056275:P.aeruginosa_downregulated_pmk-1(km25)_dependentTranscripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, but pmk-1(km25) animals showed reduced fold change after they went through the same infection.
WBPaper00055626:pry-1(mu38)_downregulatedTranscripts that showed significantly decreased expression in pry-1(mu38) animals comparing to in N2 at L1 larva stage.
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
WBPaper00057288:Cold_upregulated_transcriptTranscripts that showed significantly increased expression in N2 animals treated with empty RNAi vector at 15C comparing to N2 animals treated with empty RNAi vector at 20C.
WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00053321:PGCs_depleted_NuGenTranscripts that were depleted in embryonic primordial germ cells (PGCs) comparing to in whole embryo, according to NuGen RNAseq.
WBPaper00053184:sma-2(rax5)_upregulatedTranscripts that showed significantly increased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00057288:iff-1(RNAi)_upregulated_transcriptTranscripts that showed significantly increased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
WBPaper00059664:srbc-48(ac23)_upregulatedTranscripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.
WBPaper00046161:Q40-aggregate-protein_Day7_Sarcosyl-insolubleProteins that co-aggregated with Q40-YFP in day 7 adults that were sarcosyl-insoluble.
WBPaper00048423:LP133_LF21_upregulatedGenes with increased expression in response to heat-killed LP133 or LF21 cells compared with E. coli OP50 cells
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
WBPaper00040285:H2S_24hr_downregulatedGenes that are significantly down regulated after 24 hour exposure to H2S.
WBPaper00025141:unc-4::GFP_Enriched_GenesExpressed transcripts enriched in embryonic motor neurons (identified by unc-4::GFP expressing cells).
WBPaper00061651:RIA_enrichedTranscripts enriched in RIA according to single cell RNAseq.
WBPaper00035227:heat_shock_regulatedGenes regulated by heat shock.
WBPaper00056619:CEPsh_enrichedTranscripts enriched in CEPsh glia cells comparing to RNA counts that were derived from all other cells.
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseqGenes with decreased expression after 12 hours of infection by D.coniospora Fold changes shown are pathogen vs OP50.
WBPaper00052884:emb-4(hc60)_upregulatedTranscripts that showed significantly increased expression in emb-4(hc60) comparing to in N2.
WBPaper00041939:control_vs_UVC-exposed_3hGenes differentially expressed in control vsafter UVC exposure without EtBr treatment, at the -45h timepoint (3 hours after the first UVC dose).
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adultTranscripts that showed significantly increased expression in pgl-1(ct131) animals (isolated from SS0002[pgl-1(ct131)him-3(e1147)], comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
WBPaper00046805:csr-1(RNAi)_downregulated_Set2mRNAs that showed decreased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 1 transcripts were defined as adjusted p-value < 0.05 and fold change > 2.6.
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependentTranscripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, but atf-7(qd22qd130) animals showed reduced fold change after they went through the same infection.
WBPaper00036123:Atrazine_regulatedGenes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment.
WBPaper00031832:slr-2_regulatedA complete list of the genes that showed differential expression in a slr-2 mutant strain.
WBPaper00048923:Aging_regulatedGenes that showed differential expression in Day 1, 10 and 20 adult stages.
WBPaper00056139:gut-microbiota_downregulatedTranscripts that showed significantly decreased expression after L1 larva grew on synthetic microbiota from C. elegans guts (SC1) at 25C for 3 days.
WBPaper00046805:csr-1(RNAi)_downregulated_Set1mRNAs that showed decreased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 1 transcripts were defined as P-value < 0.05 and fold change > 1.9.
WBPaper00032976:dosage_compensated_genesGenes that are dosage compensated.
WBPaper00041939:control_vs_UVC-EtBr-exposed_3hGenes differentially expressed in control vs after UVC exposure and EtBr treatment at the -45h timepoint (3 hours after the first UVC dose).
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00057347:nhr-14(tm1473)_downreglatedTranscripts that showed significantly decreased expression in nhr-14(tm1473) comparing to in N2 at L4 larva stage.
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3hGenes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -45h timepoint (3 hours after the first UVC dose).
WBPaper00056275:P.aeruginosa_upregulatedTranscripts that showed significantly increased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, comparing to N2 animals grown in OP50.
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -45h timepoint (3 hours after the first UVC dose).
WBPaper00024970:GABAergic_neuron_specificGenes enriched in GABAergic neurons by comparing GABAergic neurons collected via FACS purification from juIs76 (with Punc-25-GFP reporter construct marking DD and RME GABAergic neurons) and juIs14 (with Pacr-2-GFP reporter marking DA and DB cholinergic motor neurons as well as other neurons) with total cells. The FACS purification therefore resulted in 50-fold enrichment of GABAergic neurons.
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00045521:OogenicGenes that were enriched in oogenic fog-2(q71) gonads comparing to in spermatogenic fem-3(q96gf), according to RNAseq analysis.
WBPaper00050990:body-muscle_expressedTranscripts expressed in body muscle, according to PAT-Seq analysis using Pmyo-3-GFP-3XFLAG mRNA tagging.
WBPaper00061527:tub-2_4713-daf-2_5288Coexpression clique No. 78, tub-2_4713-daf-2_5288, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00050990:arcade_intestinal-valve_expressedTranscripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging.
WBPaper00050344:PLM-neuron_enrichedTranscripts that showed significantly increased expression in PLM neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis.
WBPaper00059421:daf-1(m40)\;daf-3(mgDf90)_downregulatedTranscripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in N2 at 1-day post L4 adult hermaphrodite animals.
WBPaper00060014:set-2(tm1630)_downregulatedTranscripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
WBPaper00050726:OsmoticStress_regulated_FoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
WBPaper00061527:sol-1-jnk-1_18695Coexpression clique No. 83, sol-1-jnk-1_18695, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
WBPaper00061203:sin-3(tm1276)_upregulatedTranscripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2.
WBPaper00056275:P.aeruginosa_downregulatedTranscripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, comparing to N2 animals grown in OP50.
WBPaper00059027:neuron-synapses_depletedTranscripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
WBPaper00058598:mex-1(or286)_upregulatedTranscripts that showed significantly increased expression in mex-1(or286) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00025141:N2_Expressed_GenesGenes expressed in N2.
WBPaper00058598:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00051404:alg-1(gk214)_upregulatedTranscripts that showed significantly increased expression in alg-1(gk214), comparing to in N2.
WBPaper00056443:sek-1(km4)_upregulatedTranscripts that showed significantly increased expression in sek-1(km4) animals comparing to in N2 animals under both dietary (DR, OP50 OD = 0.1) and ad libtum (AL, OP50 OD = 3) conditions from 3-day post L4 till 6-day post L4 adult hermaphrodite stage.
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulatedGenes that showed significantly increased expression after exposure to adsorbable organic bromine compounds (AOBr) contained in M. aeruginosa batch culture.
WBPaper00036375:enriched_in_PVD_OLLGenes with expression enriched in PVD and OLL neurons. Data sets were normalized by RMA and transcripts showing relative PVD enrichment (>= 1.5X) vs. the reference sample were identified by SAM analysis (False Discovery Rate, FDR < 1%).
WBPaper00049626:UNC-75_targetmRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
WBPaper00040285:H2S_12hr_downregulatedGenes that are significantly down regulated after 12 hour exposure to H2S.
WBPaper00048988:neuron_enrichedTranscripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00045390:ubc-9(RNAi)_downregulatedGenes that showed significantly decreased expression in ubc-9(RNAi) animals comparing to control RNAi animals.
WBPaper00061479:mep-1(ne4629)_upregulatedTranscripts that showed significantly increased expression in mep-1(ne4629[MEP-1-GFP-Degron]) in gonads dissected from 1-day old adult animals.
WBPaper00034661:AgNPs_downregulatedGenes downregulated more than 2 fold after 24 hours of AgNPs exposure.
WBPaper00026929:sir-2.1_overexpression_regulatedGenes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.
WBPaper00059421:daf-3(mgDf90)_downregulatedTranscripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals.
WBPaper00061479:hda-1(ne4752)_upregulatedTranscripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.
WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
[cgc6390]:Cluster_AGermline-enriched and sex-biased expression profile cluster A.
WBPaper00046121:ecdoderm_uniqueGenes uniquely expressed in ecdoderm, according to RNAseq studies on blastomere (with isolated AB, MS, E, C, D founder cells dividing in vitro) time course and whole embryo time course.
WBPaper00061081:E.faecalis_upregulated_N2Transcripts that showed significantly increased expression in N2 animals fed by E. faecalis strain OG1RF for 16 hours after L4 larva stage at 25C.
WBPaper00058598:mex-3(eu149)_upregulatedTranscripts that showed significantly increased expression in mex-3(eu149) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00061527:sre-33-ZK1025.1_8337Coexpression clique No. 203, sre-33-ZK1025.1_8337, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00045420:fertilization_downregulated_RNAseqmRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
WBPaper00031003:24hr_muscle_depletedGenes depleted in muscle cells (24hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 24 hours before FACS sorting.
WBPaper00060661:sensory-neuron_enrichedTranscripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
WBPaper00035588:alg-1(-)_upregulatedGenes upregulated by alg-1(-).
WBPaper00055565:AVK_enrichedTranscripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
WBPaper00056471:S.aureus-4h_upregulated_N2Transcripts that showed significantly increased expression after N2 animals had 4 hours of infection by Staphylococcus aureus (MW2).
WBPaper00061203:spr-1(ok2144)_upregulatedTranscripts that showed significantly increased expression in spr-1(ok2144) comparing to in N2.
WBPaper00031003:0hr_muscle_depletedGenes depleted in muscle cells (0hr muscle dataset). Dissociated myo-3::GFP embryos were cultured for 0 hours before FACS sorting.
WBPaper00041939:control_vs_EtBr-exposed_48hGenes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
WBPaper00054493:hpl-2(tm1489)_upregulatedTranscripts that showed significantly increased expression in hpl-2(tm1489) comparing to in N2 animals.
WBPaper00057098:SiO2-nanoparticles_upregulatedTranscripts that showed significantly increased expression after exposure of to 10 mg per liter of SiNPs for 24 h.
WBPaper00047070:N2_starvation_upregulatedGenes with significantly increased expression in N2 animals after 4 hours of starvation.
WBPaper00031003:total_muscle_depletedTotal muscle depleted genes (complete list of non-overlapping genes from the 0hr and 24hr muscle depleted datasets).
WBPaper00061007:HB101_upregulatedTranscripts that showed significantly increased expression after fed by bacteria E. coli HB101 for 30 generations comparing to animals fed by E. coli OP50.
WBPaper00058958:100mGy-irradiation-72h_upregulatedTranscripts that showed significantly increased expression after exposure to 100mGy per hour gamma irradiation from L1 to day 1 adult hermaphrodite stage.
WBPaper00056090:E.faecalis_upregulated_N2Transcripts that showed significantly increased expression in N2 after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00047070:xpa-1_UV_downregulatedGenes with significantly decreased expression in xpa-1(ok698) animals after treated with 10mJ per square cm UV and harvested 6 hours later.
WBPaper00060459:bcat-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
WBPaper00053302:zidovudine_72h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to zidovudine (AZT) starting at L1 lava stage.
WBPaper00037055:DAF-16_binding_DNADAF-16 binding DNA target identified by chromatin profiling by DNA adenine methyltransferase identification (DamID).
WBPaper00056471:aak-1(tm1944)\;aak-2(ok524)_upregulatedTranscripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2.
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00053295:lin-22(ot267)_upregulatedTranscripts that showed significantly increased expression in lin-22(ot267) comparing to in N2 at L3 larva.
WBPaper00049545:cco-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in cco-1(RNAi) comparing to in control animals.
WBPaper00053295:lin-22(ot269)_upregulatedTranscripts that showed significantly increased expression in lin-22(ot269) comparing to in N2 at L3 larva.
WBPaper00058969:RIS_enrichedTranscripts enriched in RIS neurons comparing to in all cells.
WBPaper00048989:eat-2(ad465)_rapamycin_downregulatedGenes from eat-2(ad465) animals with significantly decreased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO.
WBPaper00041906:I-3690_vs_OP50_10dDifferentially expressed genes between C.elegans fed with L.rhamnosus strain CNCM I-3690 and control strain E.coli OP50 after 10 days of feeding.
WBPaper00051404:alg-2(ok304)_upregulatedTranscripts that showed significantly increased expression in alg-2(ok304), comparing to in N2.
WBPaper00031532:Larva_Pan_Neuronal_EnrichedWT-Pico Pan-neural Enriched Genes, with genes found multiple times in a single dataset removed (without dups).
WBPaper00045316:prg-1_upregulated_L2Protein coding genes with increased expression in prg-1(wm161) comparing to in N2.
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependentTranscripts that showed significantly increased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, but atf-7(qd22qd130) animals showed reduced fold change after they went through the same infection.
WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
WBPaper00058948:PA14_downregulatedTranscripts that showed significantly decreased expression in N2 animals with 24 hours of exposure to P. aeruginosa PA14 for 24 hrs at 25C, comparing to N2 animals without exposure to PA14.
WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
WBPaper00054758:alg-1(gk204)_upregulatedTranscripts that showed significantly increased expression in alg-1(gk204) comparing to in N2 at 5-days post L4 adult hermaphrodites.
WBPaper00059763:neuron_expressedTranscripts expressed in neuronal cells in wild type background during neuron-specic RNASeq analysis via FACS of Pacr-2::gfp reporter juIs14.
WBPaper00061753:csr-1(tor159)_upregulated_25CTranscripts that showed significantly increased expression in csr-1a(tor159) comparing to in N2 at 25C.
WBPaper00055334:DLC-1_interactingTranscripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
WBPaper00050990:hypodermis_expressedTranscripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging.
WBPaper00053295:lin-22(icb38)_upregulatedTranscripts that showed significantly increased expression in lin-22(icb38) comparing to in N2 at L3 larva.
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51hGenes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00056809:smn-1(ok355)_upregulatedTranscripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2.
WBPaper00056284:ints-11(RNAi)_downregulatedTranscripts that showed significantly decreased expression in ints-11(RNAi) comparing to in N2.
WBPaper00050370:dpy-21(e428)_L3_upregulatedTranscripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.
WBPaper00050990:intestine_expressedTranscripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging.
WBPaper00042215:wdr-23(tm1817)_upregulatedGenes up-regulated in wdr-23(tm1817) mutants comparing to in N2.
WBPaper00045673:colistin_upregulatedGenes up-regulated after 24 hour exposure to colistin.
WBPaper00053184:sma-4(rax3)_upregulatedTranscripts that showed significantly increased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00046509:htz-1(ok3099)_downregulatedmRNAs that showed significantly decreased expression in htz-1(ok3099) comparing to in N2.
cgc4489_group_20Genome-wide analysis of developmental and sex-regulated gene expression profile.
WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
Microarray, Tiling Array and RNAseq:
Microarray "topography map" data:
Sites of Action:
Anatomical Sites Assay Phenotype Reference
Sufficient:true
Genetic_mosaic
details
loss of asymmetry AWCBauer Huang SL et al., 2007
Sufficient:true
Genetic_mosaic
details
loss of asymmetry AWCBauer Huang SL et al., 2007
Sufficient:true
Expression_mosaic
details
loss of asymmetry AWCBauer Huang SL et al., 2007
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