Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
ventral cord neuron
Expr8325
details
sensory neuron
WBPaper00060661:sensory-neuron_enriched
details
tail neuron
ventral nerve cord
WBPaper00037950:glr-1(+)-neurons_larva_enriched
details
neuron
  • WBPaper00037950:all-neurons_larva_enriched
    details
  • WBPaper00048988:neuron_enriched
    details
  • WBPaper00037950:all-neurons_embryo_enriched
    details
  • WBPaper00037950:all-neurons_CoreEnriched
    details
pharyngeal neuron
Expr8325
details
AVA
  • WBPaper00050990:NMDA-neuron_enriched
    details
  • WBPaper00037950:AVA-neuron_embryo_enriched
    details
PVC
WBPaper00050990:NMDA-neuron_enriched
details
vulval muscle
Expr8325
details
AVD
WBPaper00050990:NMDA-neuron_enriched
details
RIS
WBPaper00058969:RIS_enriched
details
nervous system
Expr5362
details
head neuron
Expr5362
details
Cell
Expr4047
details
nerve ring
Expr8325
details
intestine
Expr8325
details
RIM
WBPaper00050990:NMDA-neuron_enriched
details
coelomocyte
WBPaper00037950:coelomocytes_embryo_enriched
details
AVE
  • WBPaper00050990:NMDA-neuron_enriched
    details
  • WBPaper00037950:AVE-neuron_embryo_enriched
    details
AVK
WBPaper00055565:AVK_enriched
details
AVG
WBPaper00050990:NMDA-neuron_enriched
details
Expressed during:
Life stage Supporting evidence
embryo Ce
Expr4047
details
adult Ce
Expr5362
details
larva Ce
Expr5362
details
Subcellular localization:
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1145398Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1027692Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Anatomy terms:
4D expression movies:
    Expression Cluster:
    Expression clusters Description
    WBPaper00055354:Rifampicin-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
    WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
    WBPaper00045934:wrn-1(gk99)_downregulatedGenes that showed significantly decreased expression in wrn-1(gk99) comparing to in N2, according to RNAseq.
    WBPaper00059027:neuron-synapses_depletedTranscripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
    WBPaper00045420:fertilization_downregulated_RNAseqmRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
    WBPaper00055565:AVK_enrichedTranscripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
    WBPaper00059566:wdr-23(mac32)_upregulatedTranscripts that showed significantly increased expression in wdr-23(mac32) embryos from parents fed with E. coliHB101, comparing to N2 embryos parents fed with E. coli HB101.
    WBPaper00027758:Group_IIIGenes with higher expression in one or more mutants of efl-1, dpl-1 and lin-35 relative to controls.
    WBPaper00037950:A-class-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00037950:all-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00042215:wdr-23(tm1817)_upregulatedGenes up-regulated in wdr-23(tm1817) mutants comparing to in N2.
    WBPaper00037950:all-neurons_larva_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00040209:B.thuringiensis_downregulated_MY15Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY15 to pathogenic B. thuringiensis B-18247.
    WBPaper00049377:MWCNT_upregulatedGenes that showed significantly increased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.
    WBPaper00032425:up_in_lin-35Genes with expression level up in lin-35 mutant background.
    WBPaper00056731:human-amylin_upregulatedTranscripts that showed significantly increased expression in animals overexpression human amylin (driven by hsp-16.2).
    WBPaper00045521:Gender_NeutralGenes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
    WBPaper00037950:coelomocytes_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    WBPaper00056855:his-72(uge40)_upregulatedTranscripts that showed significantly increased expression in FAS58[his-72(uge40)] comparing to in N2.
    WBPaper00045015:acs-3(ft5)_upregulatedGenes up-regulated in acs-3(ft5) mutants.
    WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
    WBPaper00050990:NMDA-neuron_enrichedTranscripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
    WBPaper00056090:E.faecalis_upregulated_N2Transcripts that showed significantly increased expression in N2 after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
    WBPaper00059421:daf-3(mgDf90)_downregulatedTranscripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals.
    WBPaper00036286:Pattern_GExpression Pattern Group G, enriched for genes involved in locomotion.
    WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
    WBPaper00037950:AVA-neuron_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00040858:eQTL_regulated_developingGenes with expression level regulated by genotype (N2 vs CB4856) at L3 larva and Late reproduction stage (96 hours at 24 centigrade).
    WBPaper00037950:glr-1(+)-neurons_larva_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00060661:sensory-neuron_enrichedTranscripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
    WBPaper00033065:cyc-1(RNAi)_downregulatedSignificantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
    WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
    WBPaper00048923:Aging_regulatedGenes that showed differential expression in Day 1, 10 and 20 adult stages.
    WBPaper00061081:skpo-1(ok1640)_upregulated_OP50Transcripts that showed significantly increased expression in skpo-1(ok1640) animals comparing to in N2 when fed by OP50.
    WBPaper00054410:set-9(rw5)_downregulatedTranscripts that showed significantly decreased expression in set-9(rw5) animals comparing to in N2.
    WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_TruseqTranscripts that showed significantly increased expression in fed nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adultTranscripts that showed differential expression in 20C vs 25C in mir-34(gk437) animals at adult stage.
    WBPaper00049942:hsf-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in hsf-1(RNAi) animals comparing to in control animals, without heat shock.
    WBPaper00061479:hda-1(ne4752)_upregulatedTranscripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.
    WBPaper00053295:lin-22(ot269)_upregulatedTranscripts that showed significantly increased expression in lin-22(ot269) comparing to in N2 at L3 larva.
    WBPaper00050726:OsmoticStress_regulated_NoFoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when no food was present
    WBPaper00053295:lin-22(icb38)_upregulatedTranscripts that showed significantly increased expression in lin-22(icb38) comparing to in N2 at L3 larva.
    WBPaper00056284:ints-11(RNAi)_downregulatedTranscripts that showed significantly decreased expression in ints-11(RNAi) comparing to in N2.
    WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20CTranscripts that showed differential expression in dauer mir-34(gk437) vs dauer mir-34(OverExpression) animals at 20C.
    WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20CTranscripts that showed differential expression in dauer N2 vs dauer mir-34(gk437) animals at 20C.
    WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
    WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
    cgc4489_group_18Genome-wide analysis of developmental and sex-regulated gene expression profile.
    WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adultTranscripts that showed differential expression in 20C vs 25C in mir-34(OverExpression) animals at adult stage.
    WBPaper00050488:20C_vs_25C_regulated_N2_adultTranscripts that showed differential expression in 20C vs 25C in N2 animals at adult stage.
    WBPaper00053184:sma-4(rax3)_upregulatedTranscripts that showed significantly increased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_TruseqTranscripts that showed significantly increased expression in starved nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00036123:Atrazine_regulatedGenes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment.
    WBPaper00053184:sma-2(rax5)_upregulatedTranscripts that showed significantly increased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
    WBPaper00058598:spn-4(tm291)_upregulatedTranscripts that showed significantly increased expression in spn-4(tm291) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
    WBPaper00058598:mex-3(eu149)_upregulatedTranscripts that showed significantly increased expression in mex-3(eu149) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
    WBPaper00050726:OsmoticStress_regulated_FoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
    [cgc5376]:let-60(G12V)-regulated_genesThe cluster contains genes that showed expression changes in the let-60(G12V) time course that were different than those in the wild-type time course.
    WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
    WBPaper00037950:AVE-neuron_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00048988:neuron_enrichedTranscripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
    WBPaper00037950:all-neurons_CoreEnrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages.
    WBPaper00058691:set-2(bn129)_downregulatedTranscripts that showed significantly decreased expression in set-2(bn129) comparing to in N2 at early embryo stage.
    WBPaper00050370:dpy-21(e428)_L3_downregulatedTranscripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.
    WBPaper00058691:cfp-1(tm6369)_downregulatedTranscripts that showed significantly decreased expression in cfp-1(tm6369) comparing to in N2 at early embryo stage.
    WBPaper00060459:bcat-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
    WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00058969:RIS_enrichedTranscripts enriched in RIS neurons comparing to in all cells.
    WBPaper00058598:mex-1(or286)_upregulatedTranscripts that showed significantly increased expression in mex-1(or286) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
    WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
    WBPaper00059440:GLP-1_repressededTranscripts repressed by glp-1(ar202), a gain-of-function allele of glp-1, in the gld-2(q497) gld-1(q485) background at young adult stage, comparing to glp-1(q175) null allele.
    WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adultTranscripts that showed significantly increased expression in glh-1(gk100) animals (isolated from glh-1(gk100)/hT2(qIs48) parents), comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
    WBPaper00038438:E.faecalis_24hr_upregulated_RNAseqGenes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
    WBPaper00038438:E.faecalis_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
    WBPaper00061527:C25E10.11-F35H12.1Coexpression clique No. 59, C25E10.11-F35H12.1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
    WBPaper00055626:pry-1(mu38)_downregulatedTranscripts that showed significantly decreased expression in pry-1(mu38) animals comparing to in N2 at L1 larva stage.
    WBPaper00059440:LAG-1_repressed_48hr-auxinTranscripts repressed by lag-1(oz536oz537), in the gld-2(q497)gld-1(q485); glp-1(ar202) background at young adult stage after 48 hours of 1mM auxin treatment.
    WBPaper00046805:csr-1(RNAi)_upregulated_Set1mRNAs that showed increased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 1 transcripts were defined as P-value < 0.05 and fold change > 1.9.
    WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseqGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
    WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
    WBPaper00045861:wdr-5(ok1417)_upregulatedGenes that showed increased expression in wdr-5(ok1417) comparing with in N2.
    WBPaper00037950:all-neurons_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adultTranscripts that showed significantly increased expression in pgl-1(ct131) animals (isolated from SS0002[pgl-1(ct131)him-3(e1147)], comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
    WBPaper00031040:TGF-beta_adult_upregulatedTGF- Dauer pathway adult transcriptional targets. Results obtained by comparing the microarray results of the dauer-constitutive mutants daf-7(e1372), daf-7(m62), and daf-1(m40) with dauer-defective mutants daf-3(mgDf90), daf-5(e1386), and daf-7(e1372);daf-3(mgDf90) double mutants at the permissive temperature, 20C, on the first day of adulthood.
    WBPaper00050094:mes-2(bn11)_upregulatedTranscripts that showed significantly increased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
    WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
    WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
    WBPaper00058942:henn-1(pk2295)_upregulatedmRNAs significantly upregulated >1.3 fold in henn-1(pk2295) gonads comparing to in N2 gonads 68 - 70 hours after L1 larva stage.
    WBPaper00056443:DietaryRestriction_downregulatedTranscripts that showed significantly decreased expression after N2 animals were under dietary restriction (DR, OP50 OD = 0.1) from 3-day post L4 till 6-day post L4 adult hermaphrodite stage, comparing to under ad libtum (AL, OP50 OD = 3) condition.
    WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_TruseqTranscripts that showed significantly increased expression in fed mes-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
    WBPaper00045861:set-2(ok952)_upregulatedGenes that showed increased expression in set-2(ok952) comparing with in N2.
    WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
    WBPaper00037950:glr-1(+)-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
    WBPaper00033101:spr-5_regulatedGenes regulated by spr-5 (greater than 2-fold change between spr-5(by101) generations 1, 13, and 26).
    WBPaper00060014:set-2(tm1630)_downregulatedTranscripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
    WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
    WBPaper00057288:iff-1(RNAi)_upregulated_transcriptTranscripts that showed significantly increased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
    WBPaper00037950:coelomocytes_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
    WBPaper00061439:unc-30(ok613)_downregulatedTranscripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.
    Microarray, Tiling Array and RNAseq:
    Microarray "topography map" data:
    Site of Action:
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