Anatomic expression pattern:

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Anatomy term	Supporting evidence
ventral cord neuron	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details
sensory neuron	WBPaper00060661:sensory-neuron_enriched Algorithm: Fold change > 2, p-value < 0.05. Citation: Li Q et al., 2020 Description: Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Method of isolation: FACS details
tail neuron	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details Expr5362 Description: Larval Expression: Nervous System; head neurons; tail neurons;; Adult Expression: Nervous System; head neurons; tail neurons; Paper: McKay SJ et al., 2003; Hunt-Newbury R et al., 2007 Reagents: sEx14958 (transgene) Type: Reporter gene details
ventral nerve cord	WBPaper00037950:glr-1(+)-neurons_larva_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details
neuron	WBPaper00037950:all-neurons_larva_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details WBPaper00048988:neuron_enriched Algorithm: DESeq. False discovry rate (FDR) < 0.1. Citation: Kaletsky R et al., 2016 Description: Transcripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression. Method of isolation: FACS details WBPaper00037950:all-neurons_embryo_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details WBPaper00037950:all-neurons_CoreEnriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages. Method of isolation: mRNA tagging details
pharyngeal neuron	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details
AVA	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details WBPaper00037950:AVA-neuron_embryo_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details
PVC	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details
vulval muscle	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details
AVD	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details
RIS	WBPaper00058969:RIS_enriched Algorithm: edgeR 3.24.3, FDR < 0.01 Citation: Konietzka J et al., 2019 Description: Transcripts enriched in RIS neurons comparing to in all cells. Method of isolation: FACS details
nervous system	Expr5362 Description: Larval Expression: Nervous System; head neurons; tail neurons;; Adult Expression: Nervous System; head neurons; tail neurons; Paper: McKay SJ et al., 2003; Hunt-Newbury R et al., 2007 Reagents: sEx14958 (transgene) Type: Reporter gene details
head neuron	Expr5362 Description: Larval Expression: Nervous System; head neurons; tail neurons;; Adult Expression: Nervous System; head neurons; tail neurons; Paper: McKay SJ et al., 2003; Hunt-Newbury R et al., 2007 Reagents: sEx14958 (transgene) Type: Reporter gene details
Cell	Expr4047 Description: Broadly expressed in soma/embryo . Paper: Chi W & Reinke V, 2006 Type: In situ details
nerve ring	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details
intestine	Expr8325 Description: Expression is observed in a few neurons of the pharyngeal nervous system (PN), in numerous unidentified NR interneurons, in most motor neurons of the VNC, and in neurons and muscle cells in the tail. Diffuse GFP expression is also observed in vulval muscles (VM) and diffusely in the intestine (INT). Paper: Humphrey JA et al., 2007 Reagents: WBTransgene00030461 (transgene) Type: Reporter gene details
RIM	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details
coelomocyte	WBPaper00037950:coelomocytes_embryo_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details
AVE	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details WBPaper00037950:AVE-neuron_embryo_enriched Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Citation: Spencer WC et al., 2011 Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage. Method of isolation: mRNA tagging details
AVK	WBPaper00055565:AVK_enriched Algorithm: edgeR, FDR < 0.001, fold change > 2. Citation: Oranth A et al., 2018 Description: Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. Method of isolation: FACS details
AVG	WBPaper00050990:NMDA-neuron_enriched Algorithm: Cufflinks FPKM value >=1. Citation: Blazie SM et al., 2017 Description: Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. Method of isolation: mRNA tagging details

Life stage	Supporting evidence
embryo Ce	Expr4047 Description: Broadly expressed in soma/embryo . Paper: Chi W & Reinke V, 2006 Type: In situ details
adult Ce	Expr5362 Description: Larval Expression: Nervous System; head neurons; tail neurons;; Adult Expression: Nervous System; head neurons; tail neurons; Paper: McKay SJ et al., 2003; Hunt-Newbury R et al., 2007 Reagents: sEx14958 (transgene) Type: Reporter gene details
larva Ce	Expr5362 Description: Larval Expression: Nervous System; head neurons; tail neurons;; Adult Expression: Nervous System; head neurons; tail neurons; Paper: McKay SJ et al., 2003; Hunt-Newbury R et al., 2007 Reagents: sEx14958 (transgene) Type: Reporter gene details

Spatio-Temporal Expression Patterns:

Pattern	Type	Description	Database
Expr1145398 view images	Rnaseq	Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015... Reference: Hashimshony T, Feder M, Levin M, Hall BK & Yanai I, 2015 details
Expr1027692 view images	Microarray	Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012... Reference: Levin M, Hashimshony T, Wagner F & Yanai I, 2012 details

Anatomy terms:

Expression clusters	Description
WBPaper00055354:Rifampicin-Allantoin_downregulated	Transcripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
WBPaper00060811:L1_vs_adult_upregulated_neural	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
WBPaper00045934:wrn-1(gk99)_downregulated	Genes that showed significantly decreased expression in wrn-1(gk99) comparing to in N2, according to RNAseq.
WBPaper00059027:neuron-synapses_depleted	Transcripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
WBPaper00045420:fertilization_downregulated_RNAseq	mRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis.
WBPaper00055565:AVK_enriched	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
WBPaper00059566:wdr-23(mac32)_upregulated	Transcripts that showed significantly increased expression in wdr-23(mac32) embryos from parents fed with E. coliHB101, comparing to N2 embryos parents fed with E. coli HB101.
WBPaper00027758:Group_III	Genes with higher expression in one or more mutants of efl-1, dpl-1 and lin-35 relative to controls.
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00037950:all-neurons_L1-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00042215:wdr-23(tm1817)_upregulated	Genes up-regulated in wdr-23(tm1817) mutants comparing to in N2.
WBPaper00037950:all-neurons_larva_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00040209:B.thuringiensis_downregulated_MY15	Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY15 to pathogenic B. thuringiensis B-18247.
WBPaper00049377:MWCNT_upregulated	Genes that showed significantly increased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.
WBPaper00032425:up_in_lin-35	Genes with expression level up in lin-35 mutant background.
WBPaper00056731:human-amylin_upregulated	Transcripts that showed significantly increased expression in animals overexpression human amylin (driven by hsp-16.2).
WBPaper00045521:Gender_Neutral	Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.
WBPaper00037950:coelomocytes_L1-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00056855:his-72(uge40)_upregulated	Transcripts that showed significantly increased expression in FAS58[his-72(uge40)] comparing to in N2.
WBPaper00045015:acs-3(ft5)_upregulated	Genes up-regulated in acs-3(ft5) mutants.
WBPaper00049545:jmjd-3.1(+)_upregulated	Transcripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
WBPaper00050990:NMDA-neuron_enriched	Transcripts uniquely expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
WBPaper00056090:E.faecalis_upregulated_N2	Transcripts that showed significantly increased expression in N2 after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00059421:daf-3(mgDf90)_downregulated	Transcripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals.
WBPaper00036286:Pattern_G	Expression Pattern Group G, enriched for genes involved in locomotion.
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)	Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00037950:AVA-neuron_embryo_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00040858:eQTL_regulated_developing	Genes with expression level regulated by genotype (N2 vs CB4856) at L3 larva and Late reproduction stage (96 hours at 24 centigrade).
WBPaper00037950:glr-1(+)-neurons_larva_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00060661:sensory-neuron_enriched	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
WBPaper00033065:cyc-1(RNAi)_downregulated	Significantly downregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00048923:Aging_regulated	Genes that showed differential expression in Day 1, 10 and 20 adult stages.
WBPaper00061081:skpo-1(ok1640)_upregulated_OP50	Transcripts that showed significantly increased expression in skpo-1(ok1640) animals comparing to in N2 when fed by OP50.
WBPaper00054410:set-9(rw5)_downregulated	Transcripts that showed significantly decreased expression in set-9(rw5) animals comparing to in N2.
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq	Transcripts that showed significantly increased expression in fed nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult	Transcripts that showed differential expression in 20C vs 25C in mir-34(gk437) animals at adult stage.
WBPaper00049942:hsf-1(RNAi)_upregulated	Transcripts that showed significantly increased expression in hsf-1(RNAi) animals comparing to in control animals, without heat shock.
WBPaper00061479:hda-1(ne4752)_upregulated	Transcripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.
WBPaper00053295:lin-22(ot269)_upregulated	Transcripts that showed significantly increased expression in lin-22(ot269) comparing to in N2 at L3 larva.
WBPaper00050726:OsmoticStress_regulated_NoFood	Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when no food was present
WBPaper00053295:lin-22(icb38)_upregulated	Transcripts that showed significantly increased expression in lin-22(icb38) comparing to in N2 at L3 larva.
WBPaper00056284:ints-11(RNAi)_downregulated	Transcripts that showed significantly decreased expression in ints-11(RNAi) comparing to in N2.
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C	Transcripts that showed differential expression in dauer mir-34(gk437) vs dauer mir-34(OverExpression) animals at 20C.
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C	Transcripts that showed differential expression in dauer N2 vs dauer mir-34(gk437) animals at 20C.
WBPaper00050488:adult_vs_dauer_regulated_N2_20C	Transcripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
cgc4489_group_18	Genome-wide analysis of developmental and sex-regulated gene expression profile.
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult	Transcripts that showed differential expression in 20C vs 25C in mir-34(OverExpression) animals at adult stage.
WBPaper00050488:20C_vs_25C_regulated_N2_adult	Transcripts that showed differential expression in 20C vs 25C in N2 animals at adult stage.
WBPaper00053184:sma-4(rax3)_upregulated	Transcripts that showed significantly increased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq	Transcripts that showed significantly increased expression in starved nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
WBPaper00036123:Atrazine_regulated	Genes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment.
WBPaper00053184:sma-2(rax5)_upregulated	Transcripts that showed significantly increased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00058598:spn-4(tm291)_upregulated	Transcripts that showed significantly increased expression in spn-4(tm291) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00058598:mex-3(eu149)_upregulated	Transcripts that showed significantly increased expression in mex-3(eu149) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00050726:OsmoticStress_regulated_Food	Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
[cgc5376]:let-60(G12V)-regulated_genes	The cluster contains genes that showed expression changes in the let-60(G12V) time course that were different than those in the wild-type time course.
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated	Transcripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
WBPaper00037950:AVE-neuron_embryo_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00048988:neuron_enriched	Transcripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
WBPaper00037950:all-neurons_CoreEnriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages.
WBPaper00058691:set-2(bn129)_downregulated	Transcripts that showed significantly decreased expression in set-2(bn129) comparing to in N2 at early embryo stage.
WBPaper00050370:dpy-21(e428)_L3_downregulated	Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.
WBPaper00058691:cfp-1(tm6369)_downregulated	Transcripts that showed significantly decreased expression in cfp-1(tm6369) comparing to in N2 at early embryo stage.
WBPaper00060459:bcat-1(RNAi)_upregulated	Transcripts that showed significantly increased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
WBPaper00058969:RIS_enriched	Transcripts enriched in RIS neurons comparing to in all cells.
WBPaper00058598:mex-1(or286)_upregulated	Transcripts that showed significantly increased expression in mex-1(or286) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
WBPaper00059440:GLP-1_represseded	Transcripts repressed by glp-1(ar202), a gain-of-function allele of glp-1, in the gld-2(q497) gld-1(q485) background at young adult stage, comparing to glp-1(q175) null allele.
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult	Transcripts that showed significantly increased expression in glh-1(gk100) animals (isolated from glh-1(gk100)/hT2(qIs48) parents), comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq	Genes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray	Genes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
WBPaper00061527:C25E10.11-F35H12.1	Coexpression clique No. 59, C25E10.11-F35H12.1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00055626:pry-1(mu38)_downregulated	Transcripts that showed significantly decreased expression in pry-1(mu38) animals comparing to in N2 at L1 larva stage.
WBPaper00059440:LAG-1_repressed_48hr-auxin	Transcripts repressed by lag-1(oz536oz537), in the gld-2(q497)gld-1(q485); glp-1(ar202) background at young adult stage after 48 hours of 1mM auxin treatment.
WBPaper00046805:csr-1(RNAi)_upregulated_Set1	mRNAs that showed increased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 1 transcripts were defined as P-value < 0.05 and fold change > 1.9.
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq	Genes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray	Genes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00045861:wdr-5(ok1417)_upregulated	Genes that showed increased expression in wdr-5(ok1417) comparing with in N2.
WBPaper00037950:all-neurons_embryo_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult	Transcripts that showed significantly increased expression in pgl-1(ct131) animals (isolated from SS0002[pgl-1(ct131)him-3(e1147)], comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
WBPaper00031040:TGF-beta_adult_upregulated	TGF- Dauer pathway adult transcriptional targets. Results obtained by comparing the microarray results of the dauer-constitutive mutants daf-7(e1372), daf-7(m62), and daf-1(m40) with dauer-defective mutants daf-3(mgDf90), daf-5(e1386), and daf-7(e1372);daf-3(mgDf90) double mutants at the permissive temperature, 20C, on the first day of adulthood.
WBPaper00050094:mes-2(bn11)_upregulated	Transcripts that showed significantly increased expression in the dissected gonads of mes-2(bn11) unc-4(e120)(II), comparing to in the dissected gonads of unc-4(e120)(II)
WBPaper00050990:NMDA-neuron_expressed	Transcripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00058942:henn-1(pk2295)_upregulated	mRNAs significantly upregulated >1.3 fold in henn-1(pk2295) gonads comparing to in N2 gonads 68 - 70 hours after L1 larva stage.
WBPaper00056443:DietaryRestriction_downregulated	Transcripts that showed significantly decreased expression after N2 animals were under dietary restriction (DR, OP50 OD = 0.1) from 3-day post L4 till 6-day post L4 adult hermaphrodite stage, comparing to under ad libtum (AL, OP50 OD = 3) condition.
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq	Transcripts that showed significantly increased expression in fed mes-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
WBPaper00045861:set-2(ok952)_upregulated	Genes that showed increased expression in set-2(ok952) comparing with in N2.
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated	Transcripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed	Genes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00033101:spr-5_regulated	Genes regulated by spr-5 (greater than 2-fold change between spr-5(by101) generations 1, 13, and 26).
WBPaper00060014:set-2(tm1630)_downregulated	Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
WBPaper00048988:neuron_expressed	Transcripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
WBPaper00057288:iff-1(RNAi)_upregulated_transcript	Transcripts that showed significantly increased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
WBPaper00037950:coelomocytes_embryo_enriched	Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00061439:unc-30(ok613)_downregulated	Transcripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.

Microarray, Tiling Array and RNAseq:

Perform Clustering Analysis in SPELL (documentation)
Show Expression Levels of nca-2 in All Datasets

C27F2.2 Mountain: 6
C27F2.3 Mountain: 9

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