Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
seam cell
Expr5535
details
hypodermis
  • Expr5533
    details
  • Expr5534
    details
  • Expr5535
    details
rectal epithelium
Expr5535
details
CEPshDR
WBPaper00056619:CEPsh_enriched
details
sensory neuron
WBPaper00060661:sensory-neuron_enriched
details
pm3
Expr1458
details
neuron
body wall musculature
Expr1458
details
intestine
  • Expr5533
    details
  • Expr5535
    details
  • Expr5534
    details
  • WBPaper00029359_1604
    details
  • WBPaper00029359_1504
    details
  • WBPaper00029359_1280
    details
  • WBPaper00029359_1444
    details
  • WBPaper00029359_1217
    details
AMsoR
Expr5534
details
CEPshVL
WBPaper00056619:CEPsh_enriched
details
M4 neuron
Expr1458
details
head mesodermal cell
WBPaper00056826:hmc_biased
details
AMsoL
Expr5534
details
preanal ganglion
Expr1458
details
pm4
Expr1458
details
head neuron
  • Expr5533
    details
  • Expr1458
    details
AWCL
ventral cord neuron
  • Expr5533
    details
  • Expr1458
    details
pm5
Expr1458
details
PVD
WBPaper00036375:enriched_in_PVD_OLL
details
arcade cell
Expr5535
details
anal depressor muscle
Expr1458
details
CEPshDL
WBPaper00056619:CEPsh_enriched
details
OLL
WBPaper00036375:enriched_in_PVD_OLL
details
pharynx
  • Expr5535
    details
  • Expr5534
    details
  • Expr5533
    details
tail
  • Expr5534
    details
  • Expr5533
    details
RIS
WBPaper00058969:RIS_enriched
details
AVK
WBPaper00055565:AVK_enriched
details
AWCR
CEPshVR
WBPaper00056619:CEPsh_enriched
details
pm7
Expr1458
details
nervous system
Expr5533
details
head
Expr5534
details
Expressed during:
Life stage Supporting evidence
1.5-fold embryo Ce
Expr1458
details
2-fold embryo Ce
Expr1458
details
embryo Ce
Expr5534
details
adult Ce
  • Expr5534
    details
  • Expr5533
    details
  • Expr5535
    details
larva Ce
  • Expr5534
    details
  • Expr5533
    details
  • Expr5535
    details
3-fold embryo Ce
Expr1458
details
postembryonic Ce
Expr1458
details
fully-elongated embryo Ce
Expr1458
details
Subcellular localization:
Cellular component Supporting evidence
axon
plasma membrane
neuronal cell body
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1146697Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1013253Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Expr1030759Tiling array
Tiling arrays expression graphs...
details
Wormviz
Anatomy terms:
4D expression movies:
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Expression Cluster:
Expression clusters Description
WBPaper00042561:smgl-1(RNAi)_upregulatedGenes with significant increase of expression in NBAS smgl-1(RNAi) comparing to control.
WBPaper00053302:stavudine_24h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to stavudine (d4T) starting at L1 lava stage.
WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
WBPaper00056826:hmc_biasedTranscripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
WBPaper00045294:50uM_DBAA_downregulatedGenes that showed decreased expression after 50uM DBAA treatment comparing with control.
WBPaper00049942:hsf-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in hsf-1(RNAi) animals comparing to in control animals, without heat shock.
WBPaper00059471:EGL-43_interactingTranscripts that interact with endogenous EGL-43-GFP at L3 larva stage according to CHIP-Seq analysis.
WBPaper00040963:Q100_downGenes down-regulated after 100 um Quercetin treatment. Fold change < 0.8.
WBPaper00024671:AFD_AWB_vs_unsorted_upregulatedGenes predicted to be upregulated more than 2.0 fold in (AFD+AWB) datasets as compared to unsorted whole embryonic cells dataset.
WBPaper00042548:miRISC_enrichedGenes enriched in neuronal miRNA-induced silencing complexes (miRISC) as detected by immunoprecipitations and microarray analysis.
WBPaper00025032:cluster_97C-lineage related expression profile.
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2Genes down regulated in the absence of TDP-1, when the threshold was set at a fold change (FC) of 1.2.
WBPaper00055482:Tunicamycin_downregulatedTranscripts that showed significantly decreased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals.
WBPaper00056034:pals-22(jy3)_upregulatedTranscripts that showed significantly increased expression in pals-22(jy3) comparing to in N2 at L4 larva stage.
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00056169:rrf-3(pk1426)_upregulated_embryoTranscripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at embryo stage.
WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
WBPaper00030839:Larval_Pan_NeuronalLarval Pan-neural Enriched Genes.
WBPaper00040963:Q200_downGenes down-regulated after 200 um Quercetin treatment. Fold change < 0.8.
WBPaper00041939:control_vs_UVC-exposed_51hGenes differentially expressed in control vsafter UVC exposure without EtBr treatment, at the 3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00057154:HeatShock_downregulated_miRNA-targetMicro RNA targets that showed significantly decreased expression after L4 larva N2 animals were heat stressed at 35C for 4 hours
WBPaper00033065:cyc-1(RNAi)_upregulatedSignificantly upregulated genes from cyc-1(RNAi) microarrays using SAM algorithm with an FDR < 0.1 from adult-only chips.
WBPaper00005124:estrogen_10-5M_regulatedGenes up or down regulated by 10e-05M of estrogen. The normalized values used were G/R ratio > 2.6 for up-regulation and G/R ratio < 0.38 for down-regulation, which corresponds to 1.39 and -1.39 log(base2) G/R ratio, respectively.
WBPaper00055626:pry-1(mu38)_downregulatedTranscripts that showed significantly decreased expression in pry-1(mu38) animals comparing to in N2 at L1 larva stage.
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
WBPaper00025141:unc-4::GFP_Expressed_GenesGenes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells).
WBPaper00053321:PGCs_depleted_NuGenTranscripts that were depleted in embryonic primordial germ cells (PGCs) comparing to in whole embryo, according to NuGen RNAseq.
WBPaper00053184:sma-2(rax5)_upregulatedTranscripts that showed significantly increased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00057288:iff-1(RNAi)_upregulated_transcriptTranscripts that showed significantly increased expression in the germline of iff-1(RNAi) animals comparing to the germine of N2 animals applied with control vector at 15C.
WBPaper00059664:srbc-48(ac23)_upregulatedTranscripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
WBPaper00029359_1504Enriched in intestinal (adult).
WBPaper00050412:cco-1(RNAi)_upregulated_N2Transcripts that showed significantly increased expression in cco-1(RNAi) comaring to control(RNAi) in N2 animals.
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)Transcripts that showed significantly increased expression in hsf-1(RNAi) animals, after heat shock at 33 C for 30min, comparing to in hsf-1(RNAi) animals without heat shock.
WBPaper00056619:CEPsh_enrichedTranscripts enriched in CEPsh glia cells comparing to RNA counts that were derived from all other cells.
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseqGenes with decreased expression after 12 hours of infection by D.coniospora Fold changes shown are pathogen vs OP50.
WBPaper00052884:emb-4(hc60)_upregulatedTranscripts that showed significantly increased expression in emb-4(hc60) comparing to in N2.
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adultTranscripts that showed significantly increased expression in pgl-1(ct131) animals (isolated from SS0002[pgl-1(ct131)him-3(e1147)], comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependentTranscripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, but atf-7(qd22qd130) animals showed reduced fold change after they went through the same infection.
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseqGenes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
WBPaper00031832:slr-2_regulatedA complete list of the genes that showed differential expression in a slr-2 mutant strain.
WBPaper00029359_1217Enriched in intestinal (adult).
WBPaper00048923:Aging_regulatedGenes that showed differential expression in Day 1, 10 and 20 adult stages.
WBPaper00060683:hlh-11(ko1)_upregulatedTranscripts that showed increased expression in hlh-11(ko1) knockout strain comparing to in wild type background.
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00061210:huIs179_upregulatedTranscripts that showed significantly increased expression in Q neuroblast descendant cells expressing a constitutively active, N terminally truncated form of BAR-1 (beta-catenin) (del-N-BAR-1 Q) (huIs179).
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51hGenes differentially expressed under EtBr treatment without UVC exposure vs after UVC exposure but without EtBr treatment at the -3h timepoint (3 h after the third UVC dose (51h), which is also 3 h after being placed on food).
WBPaper00050990:body-muscle_expressedTranscripts expressed in body muscle, according to PAT-Seq analysis using Pmyo-3-GFP-3XFLAG mRNA tagging.
WBPaper00045521:SpermatogenicGenes that were enriched in spermatogenic fem-3(q96gf) gonads comparing to in oogenic fog-2(q71), according to RNAseq analysis.
WBPaper00060871:M.humicola-infection_12h_regulatedTranscripts that showed significantly altered expression 12 hours after animals were infected by M. humicola.
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulatedTranscripts that showed significantly increased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite.
WBPaper00050990:arcade_intestinal-valve_expressedTranscripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging.
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adultTranscripts that showed significantly increased expression in glh-1(gk100) animals (isolated from glh-1(gk100)/hT2(qIs48) parents), comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.
WBPaper00060014:set-2(tm1630)_downregulatedTranscripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
WBPaper00050726:OsmoticStress_regulated_FoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
WBPaper00061527:sol-1-jnk-1_18695Coexpression clique No. 83, sol-1-jnk-1_18695, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00037950:AVA-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00053599:oocyte_vs_mitosis_downregulatedTranscripts that showed significantly decreased expression in oocyte germline cells comparing to in mitosis germline cells.
WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
WBPaper00061203:sin-3(tm1276)_upregulatedTranscripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2.
WBPaper00056275:P.aeruginosa_downregulatedTranscripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 4 hours at 25C, comparing to N2 animals grown in OP50.
WBPaper00059027:neuron-synapses_depletedTranscripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
WBPaper00058598:mex-1(or286)_upregulatedTranscripts that showed significantly increased expression in mex-1(or286) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00058598:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00056443:sek-1(km4)_upregulatedTranscripts that showed significantly increased expression in sek-1(km4) animals comparing to in N2 animals under both dietary (DR, OP50 OD = 0.1) and ad libtum (AL, OP50 OD = 3) conditions from 3-day post L4 till 6-day post L4 adult hermaphrodite stage.
WBPaper00037950:all-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00050163:chd-3(eh4)\;let-418(RNAi)_upregulated_24-cell-embryoTranscripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.
WBPaper00037950:bodywall-muscle_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00036375:enriched_in_PVD_OLLGenes with expression enriched in PVD and OLL neurons. Data sets were normalized by RMA and transcripts showing relative PVD enrichment (>= 1.5X) vs. the reference sample were identified by SAM analysis (False Discovery Rate, FDR < 1%).
[cgc6390]:Cluster_BGermline-enriched and sex-biased expression profile cluster B.
WBPaper00031011:calmodulin_binding_proteinCalmodulin binding proteins isolated from round 2 of selection using an mRNA-displayed proteome library and biotinylated CaM from bovine brain as the selection target.
WBPaper00048988:neuron_enrichedTranscripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00032425:up_in_zfp-1Genes with expression level up in zfp-1 mutant background.
WBPaper00026929:sir-2.1_overexpression_regulatedGenes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.
WBPaper00059421:daf-3(mgDf90)_downregulatedTranscripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals.
WBPaper00061479:hda-1(ne4752)_upregulatedTranscripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.
WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
WBPaper00037950:all-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00058598:mex-3(eu149)_upregulatedTranscripts that showed significantly increased expression in mex-3(eu149) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00037950:A-class-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 12h), according to RNAseq.
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 1-day post L4 adult hermaphrodite stage.
WBPaper00029359_1604Enriched in intestinal (adult).
WBPaper00060661:sensory-neuron_enrichedTranscripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-backgroundGenes that showed significantly increased expression in daf-2(e1370);hel-1(gk148684) comparing to in hel-1(gk148684)
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12hmRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq.
WBPaper00055565:AVK_enrichedTranscripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
WBPaper00061203:spr-1(ok2144)_upregulatedTranscripts that showed significantly increased expression in spr-1(ok2144) comparing to in N2.
WBPaper00057098:SiO2-nanoparticles_upregulatedTranscripts that showed significantly increased expression after exposure of to 10 mg per liter of SiNPs for 24 h.
WBPaper00031003:hlh_1_enrichedGenes enriched in HLH-1 heat shock dataset.
WBPaper00047070:xpa-1_UV_downregulatedGenes with significantly decreased expression in xpa-1(ok698) animals after treated with 10mJ per square cm UV and harvested 6 hours later.
WBPaper00060459:bcat-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
WBPaper00053302:zidovudine_72h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to zidovudine (AZT) starting at L1 lava stage.
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulatedGenes with differential expression under 0.5mg/l Chlorpyrifos (CPF) and 0.5mg/l Diazinon (DZN) treatment at 24 centigrade.
WBPaper00029359_1280Enriched in intestinal (adult).
WBPaper00056471:aak-1(tm1944)\;aak-2(ok524)_upregulatedTranscripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2.
WBPaper00055103:thoc-5(wy822)_upregulatedTranscripts that showed significantly increased expression in FACS sorted neuron cells (labelled by pan-neuronal GFP) from edIs6[unc-119::GFP + rol-6(su1006)]; thoc-5(wy822) comparing to in edIs6.
WBPaper00061203:let-418(n3536)_upregulatedTranscripts that showed significantly increased expression in let-418(n3536) comparing to in N2.
WBPaper00035084:L1_enriched_AIN-2_IPmiRNA targets that are significantly enriched at L1 larva stage. To generate a global view of the dynamics of miRNA-mediated regulation of gene expression during C. elegans development, authors analyzed the mRNAs in the AIN-2-GFP IP results from five developmental stages. The magnitude of the combined interaction of miRNAs with a given target mRNA was assessed by measuring the fold enrichment of that mRNA in AIN-2 IP samples, relative to the abundance of the mRNA in the corresponding total lysate. Because this enrichment in the IP sample versus total lysate directly reflects the miRISC-associated fraction of a given mRNA, high enrichment indicates the likelihood of strong miRNA-mediated regulation of the mRNA, whereas low or negative enrichment indicates the likelihood of weak or absent miRNA regulation of the mRNA. It is also possible that poor enrichment could reflect interactions that occur only in a rare subset of cells at any given stage of development. Transcripts that were significantly enriched (0
WBPaper00055354:eat-2(ad1116)_upregulatedTranscripts that showed significantly increased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals.
WBPaper00049545:cco-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in cco-1(RNAi) comparing to in control animals.
WBPaper00056868:P.aeruginosa_upregulated_smallRNASmall RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.
WBPaper00053295:lin-22(ot269)_upregulatedTranscripts that showed significantly increased expression in lin-22(ot269) comparing to in N2 at L3 larva.
WBPaper00037950:A-class-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00058969:RIS_enrichedTranscripts enriched in RIS neurons comparing to in all cells.
WBPaper00029359_1444Enriched in intestinal (adult).
WBPaper00053810:daf-2(e1370)_downregulatedTranscripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.
WBPaper00050163:chd-3(eh4)\;let-418(RNAi)_upregulated_100-cell-embryoTranscripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.
WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
WBPaper00050990:NMDA-neuron_expressedTranscripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging.
WBPaper00050990:pharynx_expressedTranscripts expressed in pharynx, according to PAT-Seq analysis using Pmyo-2-GFP-3XFLAG mRNA tagging.
WBPaper00054758:alg-1(gk204)_upregulatedTranscripts that showed significantly increased expression in alg-1(gk204) comparing to in N2 at 5-days post L4 adult hermaphrodites.
WBPaper00059763:neuron_expressedTranscripts expressed in neuronal cells in wild type background during neuron-specic RNASeq analysis via FACS of Pacr-2::gfp reporter juIs14.
WBPaper00055334:DLC-1_interactingTranscripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
WBPaper00050990:hypodermis_expressedTranscripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging.
WBPaper00053295:lin-22(icb38)_upregulatedTranscripts that showed significantly increased expression in lin-22(icb38) comparing to in N2 at L3 larva.
WBPaper00061527:kin-29_2839-unc-9_3883Coexpression clique No. 68, kin-29_2839-unc-9_3883, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00056284:ints-11(RNAi)_downregulatedTranscripts that showed significantly decreased expression in ints-11(RNAi) comparing to in N2.
WBPaper00045294:0.1uM_TBBP_downregulatedGenes that showed decreased expression after 0.1uM TBBP treatment comparing with control.
WBPaper00050990:intestine_expressedTranscripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging.
WBPaper00044786:emr-1(RNAi)\;lem-2(tm1582)_upregulatedGenes that showed increased mRNA expression in emr-1(RNAi);lem-2(tm1582) comparing to N2.
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressedGenes that showed expression levels higher than the corresponding reference sample (Young adult all cell reference).
WBPaper00050990:seam_expressedTranscripts expressed in seam cells, according to PAT-Seq analysis using Pgrd-10-GFP-3XFLAG mRNA tagging.
WBPaper00045673:colistin_upregulatedGenes up-regulated after 24 hour exposure to colistin.
WBPaper00053184:sma-4(rax3)_upregulatedTranscripts that showed significantly increased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00058598:spn-4(tm291)_upregulatedTranscripts that showed significantly increased expression in spn-4(tm291) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00057154:HeatShock_upregulated_mRNATranscripts that showed significantly increased expression after L4 larva N2 animals were heat stressed at 35C for 4 hours
cgc4489_group_20Genome-wide analysis of developmental and sex-regulated gene expression profile.
WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
Microarray, Tiling Array and RNAseq:
Microarray "topography map" data:
Sites of Action:
Anatomical Sites Assay Phenotype Reference
Sufficient:true
Genetic_mosaic
details
electrophysiology phenotypeGao S & Zhen M, 2011
Sufficient:true
Expression_mosaic
details
electrophysiology phenotypeGao S & Zhen M, 2011
Sufficient:true
Genetic_mosaic
details
thrashing reducedGao S & Zhen M, 2011
Sufficient:true
Genetic_mosaic
details
sluggishGao S & Zhen M, 2011
Sufficient:true
Expression_mosaic
details
electrophysiology phenotypeGao S & Zhen M, 2011
Necessary:true
Genetic_mosaic
details
sustained spicule protraction defectiveGarcia LR, Mehta P & Sternberg PW, 2001
Sufficient:true
Expression_mosaic
details
vulval cell induction increasedMoghal N, Garcia LR, Khan LA, Iwasaki K & Sternberg PW, 2003
Sufficient:true
Genetic_mosaic
details
thrashing reducedGao S & Zhen M, 2011
Sufficient:true
Genetic_mosaic
details
sluggishGao S & Zhen M, 2011
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