Anatomic expression pattern:
Expression pattern images:

We display only images for which we were granted permissions from the publisher.

Single cell gene expression graphs - CeNGEN:
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Expressed in:
Anatomy term Supporting evidence
AVE
  • WBPaper00037950:AVE-neuron_embryo_SelectivelyEnriched
    details
  • WBPaper00037950:AVE-neuron_embryo_enriched
    details
MCR
WBPaper00061651:MC_enriched
details
nerve ring
Expr5587
details
VC4
  • Expr13270
    details
  • Expr13271
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RIB
WBPaper00061651:RIB_enriched
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sensory neuron
WBPaper00060661:sensory-neuron_enriched
details
pharyngeal muscle cell
  • Expr4350
    details
  • Expr4349
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neuron
body wall musculature
Expr4350
details
ALM
WBPaper00061651:ALM_enriched
details
intestine
  • Expr4350
    details
  • WBPaper00029359_1504
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  • WBPaper00029359_1280
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  • WBPaper00029359_1548
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  • WBPaper00029359_1604
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  • WBPaper00029359_1444
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  • WBPaper00029359_1217
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intestinal muscle
Expr4350
details
ventral nerve cord
  • Expr4349
    details
  • Expr13270
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MCL
WBPaper00061651:MC_enriched
details
dopaminergic neuron
  • WBPaper00037950:dopaminergic-neurons_embryo_enriched
    details
  • WBPaper00037950:dopaminergic-neurons_embryo_SelectivelyEnriched
    details
head mesodermal cell
WBPaper00056826:hmc_biased
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distal tip cell
Expr13270
details
AVL
WBPaper00061651:AVL_enriched
details
head neuron
  • Expr5587
    details
  • Expr13270
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ventral cord neuron
Expr5587
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HSN
WBPaper00061651:HSN_enriched
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posterior distal tip cell
Expr4350
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pharyngeal neuron
Expr4349
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anal depressor muscle
Expr4350
details
DVB
WBPaper00061651:DVB_enriched
details
ASER
WBPaper00050344:ASER-neuron_enriched
details
anal sphincter muscle
Expr4350
details
VC5
  • Expr13271
    details
  • Expr13270
    details
AVK
WBPaper00055565:AVK_enriched
details
GABAergic neuron
  • WBPaper00050990:GABAergic-neuron_enriched
    details
  • WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
    details
  • WBPaper00037950:GABAergic-motor-neurons_embryo_SelectivelyEnriched
    details
tail neuron
  • Expr4349
    details
  • Expr13270
    details
  • Expr5587
    details
HSNR
Expr13270
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nervous system
Expr5587
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HSNL
Expr13270
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anterior distal tip cell
Expr4350
details
Expressed during:
Life stage Supporting evidence
larva Ce
Expr5587
details
adult Ce
Expr5587
details
Subcellular localization:
Spatio-Temporal Expression Patterns:
EPIC dataset:
Expression Profiling Graphs:
Pattern Type Description Database
Expr1011199Microarray
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012...
details
Expr1147118Rnaseq
Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015...
details
Expr1030195Tiling array
Tiling arrays expression graphs...
details
Wormviz
Anatomy terms:
4D expression movies:
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Expression Cluster:
Expression clusters Description
WBPaper00042561:smgl-1(RNAi)_upregulatedGenes with significant increase of expression in NBAS smgl-1(RNAi) comparing to control.
WBPaper00048988:neuron_expressedTranscripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons.
WBPaper00056826:hmc_biasedTranscripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc).
WBPaper00059471:EGL-43_interactingTranscripts that interact with endogenous EGL-43-GFP at L3 larva stage according to CHIP-Seq analysis.
WBPaper00056034:pals-22(jy3)_upregulatedTranscripts that showed significantly increased expression in pals-22(jy3) comparing to in N2 at L4 larva stage.
WBPaper00041939:control_vs_UVC-EtBr-exposed_48hGenes differentially expressed in control vs after UVC exposure and EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00056169:rrf-3(pk1426)_upregulated_embryoTranscripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at embryo stage.
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2upGenes with no change in hcf-1(-), no change in sir-2.1(O/E) and upregulated in daf-2(-).
WBPaper00050488:adult_vs_dauer_regulated_N2_20CTranscripts that showed differential expression in adult vs dauer lava in N2 animals at 20C.
WBPaper00058725:sftb-1(cer39)_downregulatedTranscripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.
WBPaper00055897:heat-shock_downregulatedTranscripts that showed significantly decreased expression after heat shock at 34C for 75 min, recovered at room temperature for 20min and incubated at 20C for 3 hours.
WBPaper00050344:ASER-neuron_enrichedTranscripts that showed significantly increased expression in ASER neuron cells comparing to in whole animal, according to dissected single neuron RNASeq analysis.
WBPaper00055354:Rifampicin-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
WBPaper00055626:pry-1(mu38)_downregulatedTranscripts that showed significantly decreased expression in pry-1(mu38) animals comparing to in N2 at L1 larva stage.
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in sur-5p::jmjd-1.2 comparing to in N2.
WBPaper00053321:PGCs_depleted_NuGenTranscripts that were depleted in embryonic primordial germ cells (PGCs) comparing to in whole embryo, according to NuGen RNAseq.
WBPaper00053184:sma-2(rax5)_upregulatedTranscripts that showed significantly increased expression in sma-2(rax5) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00059664:srbc-48(ac23)_upregulatedTranscripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulatedTranscripts that showed significantly increased expression in rgef-1p::jmjd-1.2 comparing to in N2.
WBPaper00055354:Rapamycin-Metformin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin and 50mM Metformin from day 1 to day 3 adult hermaphradite.
WBPaper00029359_1504Enriched in intestinal (adult).
WBPaper00061651:RIB_enrichedTranscripts enriched in RIB according to single cell RNAseq.
WBPaper00037950:GABAergic-motor-neurons_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseqGenes with decreased expression after 12 hours of infection by D.coniospora Fold changes shown are pathogen vs OP50.
WBPaper00044037:eat-2_upregulatedGenes with significantly increased expression in eat-2(ad465) comparing to N2.
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00030985:Enterococcus_faecalis_upregulatedGenes up-regulated in animals infected with Enterococcus faecalis compared to the E. coli OP50 control after 24h of infection.
WBPaper00029359_1217Enriched in intestinal (adult).
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L3/L4 all cell reference).
WBPaper00061651:DVB_enrichedTranscripts enriched in DVB according to single cell RNAseq.
WBPaper00049942:HeatShock_downregulated_hsf-1(+)Transcripts that showed significantly decreased expression in animals injected with control vector, after heat shock at 33 C for 30min, comparing to without heat shock.
WBPaper00061651:AVL_enrichedTranscripts enriched in AVL according to single cell RNAseq.
WBPaper00037682:sma-2_sma-4_upregulatedGenes upregulated in sma-2 L4 (3 arrays) or sma-4 L4 (1 array) vs. N2 L4.
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArrayGenes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
WBPaper00061439:unc-30(ok613)_downregulatedTranscripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.
WBPaper00050726:OsmoticStress_regulated_FoodTranscripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present
WBPaper00061527:sol-1-jnk-1_18695Coexpression clique No. 83, sol-1-jnk-1_18695, on the genome-wide coexpression clique map for the nematode GPL200 platform.
WBPaper00037950:AVA-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00060811:L1_vs_adult_upregulated_neuralTranscripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.
WBPaper00061203:sin-3(tm1276)_upregulatedTranscripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2.
WBPaper00059027:neuron-synapses_depletedTranscripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.
WBPaper00058598:sin-3(tm1276)_downregulatedTranscripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult.
WBPaper00037950:all-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNATranscripts that showed significantly increased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.
WBPaper00049626:UNC-75_targetmRNAs that bind with neuronally expressed FLAG-tagged UNC-75 in unc-75(null) mutants CZ14662[unc-75(e950); Prgef-1-UNC-75S(juIs369)], according to CLIP-seq analysis.
WBPaper00040285:H2S_12hr_downregulatedGenes that are significantly down regulated after 12 hour exposure to H2S.
WBPaper00060871:M.humicola-extract_1h_regulatedTranscripts that showed significantly altered expression one hour after animals were exposed to M. humicola extract.
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00048988:neuron_enrichedTranscripts enriched in neuronal cells, by comparing fluorescence-activated cell sorted (FACS) neurons with whole worm expression.
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)Transcripts that showed significantly increased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.
WBPaper00059567:olrn-1(ums9)_regulatedTranscripts that showed significantly altered expression in olrn-1(ums9) comparing to in N2 animals.
WBPaper00061479:hda-1(ne4752)_upregulatedTranscripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.
WBPaper00049545:jmjd-3.1(+)_upregulatedTranscripts that showed significantly increased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2.
WBPaper00037950:dopaminergic-neurons_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00046121:ecdoderm_uniqueGenes uniquely expressed in ecdoderm, according to RNAseq studies on blastomere (with isolated AB, MS, E, C, D founder cells dividing in vitro) time course and whole embryo time course.
WBPaper00037950:all-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00061651:HSN_enrichedTranscripts enriched in HSN according to single cell RNAseq.
WBPaper00037950:A-class-motor-neurons_L2-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
WBPaper00037950:AVE-neuron_embryo_SelectivelyEnrichedGenes that show selective expression in a subset of cell types vs broadly expressed in many cell types. Correspond to 20% - 57% of enriched_genes for a given cell type.
WBPaper00053388:dauer_regulated_Cluster1Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. The expression levels of Cluster 1 gradually decreased into dauer.
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-backgroundGenes that showed significantly increased expression in daf-2(e1370);hel-1(gk148684) comparing to in hel-1(gk148684)
WBPaper00060661:sensory-neuron_enrichedTranscripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.
WBPaper00029359_1604Enriched in intestinal (adult).
WBPaper00055565:AVK_enrichedTranscripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.
WBPaper00056471:S.aureus-4h_upregulated_N2Transcripts that showed significantly increased expression after N2 animals had 4 hours of infection by Staphylococcus aureus (MW2).
WBPaper00061203:spr-1(ok2144)_upregulatedTranscripts that showed significantly increased expression in spr-1(ok2144) comparing to in N2.
WBPaper00037950:GABAergic-motor-neurons_embryo_SelectivelyEnrichedGenes that show selective expression in a subset of cell types vs broadly expressed in many cell types. Correspond to 20% - 57% of enriched_genes for a given cell type.
WBPaper00051311:VGLN-1-interactingTranscripts that physically bind VGLN-1 protein, according to RNA sequencing on immunoprecipitation using GFP-Trap A proteins, by comparing results on Pvgln-1::vgln-1::gfp (kuIs102) (strain MH4920) with Pvgln-1::gfp (kuIs103) (strain MH4922)
WBPaper00041939:control_vs_EtBr-exposed_48hGenes differentially expressed in control vs under EtBr treatment without UVC exposure, at the -1h timepoint.
WBPaper00057098:SiO2-nanoparticles_upregulatedTranscripts that showed significantly increased expression after exposure of to 10 mg per liter of SiNPs for 24 h.
WBPaper00040858:eQTL_age_regulated_agingGenes with expression level regulated by genotype (N2 vs CB4856) and age at old adults stage (214 hours at 24 centigrade).
WBPaper00055971:nhl-2(ok818)_25C_upregulatedTranscripts that showed significantly decreased expression in nhl-2(ok818) comparing to in N2 at 25C.
WBPaper00060459:bcat-1(RNAi)_upregulatedTranscripts that showed significantly increased expression in the neurons of bcat-1(RNAi) animals at 5-days post L4 adult hermaphrodite stage, comparing to animals injected with empty vector.
WBPaper00053302:zidovudine_72h_regulatedTranscripts that showed significantly altered expression after 24 hour exposure to zidovudine (AZT) starting at L1 lava stage.
WBPaper00055354:Psora-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 100uM Psora and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
WBPaper00029359_1280Enriched in intestinal (adult).
WBPaper00056471:aak-1(tm1944)\;aak-2(ok524)_upregulatedTranscripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2.
WBPaper00037950:AVE-neuron_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
WBPaper00055103:thoc-5(wy822)_upregulatedTranscripts that showed significantly increased expression in FACS sorted neuron cells (labelled by pan-neuronal GFP) from edIs6[unc-119::GFP + rol-6(su1006)]; thoc-5(wy822) comparing to in edIs6.
WBPaper00029359_1548Enriched in intestinal (adult).
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48hGenes differentially expressed under EtBr treatment and UVC exposure vs under UVC exposure but without EtBr treatment at the -1h timepoint (just prior to the third UVC dose (48h)).
WBPaper00037950:dopaminergic-neurons_embryo_SelectivelyEnrichedGenes that show selective expression in a subset of cell types vs broadly expressed in many cell types. Correspond to 20% - 57% of enriched_genes for a given cell type.
WBPaper00037950:AVE-neuron_embryo_enrichedGenes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
WBPaper00047131:daf-2(e1370)_upregulated_N2-backgroundGenes that showed significantly increased expression in daf-2(e1370) comparing to in N2.
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25CTranscripts that showed siginificantly increased expression in nmad-1(ok3133) comparing to in N2 at 25 entigrade.
WBPaper00029359_1444Enriched in intestinal (adult).
WBPaper00055354:Rapamycin-Allantoin_downregulatedTranscripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.
WBPaper00050990:GABAergic-neuron_expressedTranscripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
WBPaper00058948:PA14_downregulatedTranscripts that showed significantly decreased expression in N2 animals with 24 hours of exposure to P. aeruginosa PA14 for 24 hrs at 25C, comparing to N2 animals without exposure to PA14.
WBPaper00061753:csr-1(tor159)_upregulated_25CTranscripts that showed significantly increased expression in csr-1a(tor159) comparing to in N2 at 25C.
WBPaper00055334:DLC-1_interactingTranscripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
WBPaper00061651:ALM_enrichedTranscripts enriched in ALM according to single cell RNAseq.
WBPaper00050990:GABAergic-neuron_enrichedTranscripts uniquely expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging.
WBPaper00056284:ints-11(RNAi)_downregulatedTranscripts that showed significantly decreased expression in ints-11(RNAi) comparing to in N2.
WBPaper00037950:BAG-neuron_blastula-embryo_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 0hr reference).
cgc4489_group_18Genome-wide analysis of developmental and sex-regulated gene expression profile.
WBPaper00042215:wdr-23(tm1817)_upregulatedGenes up-regulated in wdr-23(tm1817) mutants comparing to in N2.
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00053184:sma-4(rax3)_upregulatedTranscripts that showed significantly increased expression in sma-4(rax3) comparing to in N2 at 1-day post-L4 adult hermaphrodite
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adultTranscripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.
WBPaper00061651:MC_enrichedTranscripts enriched in MC according to single cell RNAseq.
WBPaper00055648:pharynx_expressedTranscripts expressed in pharynx, according to RNA tomography.
WBPaper00044736:flat_dev_expressionGenes that showed flat mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
WBPaper00059194:klf-1(RNAi)_regulatedGenes which expression is changed in isp-1;ctb-1 mutant and is not affected by developmental klf-1 RNAi, but is brought to wild type levels by klf-1 RNAi in adulthood.
WBPaper00037950:dopaminergic-neurons_L1-larva_expressedGenes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
Microarray, Tiling Array and RNAseq:
Microarray "topography map" data:
Site of Action:
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