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[
Trends in Cell Biology,
1996]
The tubulin gene family consists of three types, the well-known a- and B-tubulins and the more recently discovered y-tubulin. However, genome-sequencing projects of Caenorhabditis elegans and Saccharomyces cerivisiae have revealed recently two tubulin genes eash so divergent from any known tubulin that they prompted a proposal to classify these as representatives of new families, the delta- and epsilon-tubulin, respectively, a reclassification implicit in the analysis of tubulin structure and function published recently in this journal. However, substantial evidence is accumulating from the distribution, function and phylogeny of these genes for a contrasting argument that really they are rapidly evolving orthologues of y-tubulin.
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Front Cell Dev Biol,
2022]
Microtubules, made from the polymerization of the highly conserved α/β-tubulin heterodimers, serve as important components of the cytoskeleton in all eukaryotic cells. The existence of multiple tubulin isotypes in metazoan genomes and a dazzling variety of tubulin posttranslational modifications (PTMs) prompted the "tubulin code" hypothesis, which proposed that microtubule structure and functions are determined by the tubulin composition and PTMs. Evidence for the tubulin code has emerged from studies in several organisms with the characterization of specific tubulins for their expression and functions. The studies of tubulin PTMs are accelerated by the discovery of the enzymes that add or remove the PTMs. In tubulin research, the use of simple organisms, such as Caenorhabditis elegans, has been instrumental for understanding the expression and functional specialization of tubulin isotypes and the effects of their PTMs. In this review, we summarize the current understanding of the expression patterns and cellular functions of the nine α-tubulin and six β-tubulin isotypes. Expression studies are greatly facilitated by the CRISPR/Cas9-mediated endogenous GFP knock-in reporters and the organism-wide single cell transcriptomic studies. Meanwhile, functional studies benefit from the ease of genetic manipulation and precise gene replacement in C. elegans. These studies identified both ubiquitously expressed tubulin isotypes and tissue-specific isotypes. The isotypes showed functional redundancy, as well as functional specificity, which is likely caused by the subtle differences in their amino acid sequences. Many of these differences concentrate at the C-terminal tails that are subjected to several PTMs. Indeed, tubulin PTM, such as polyglutamylation, is shown to modulate microtubule organization and properties in both ciliated and non-ciliated neurons. Overall, studies from C. elegans support the distinct expression and function patterns of tubulin isotypes and the importance of their PTMs and offer the promise of cracking the tubulin code at the whole-genome and the whole-organism level.
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J Struct Biol,
2001]
The microtubule cytoskeleton consists of a highly organized network of microtubule polymers bound to their accessory proteins: microtubule-associated proteins, molecular motors, and microtubule-organizing proteins. The microtubule subunits are heterodimers composed of one alpha-tubulin polypeptide and one beta-tubulin polypeptide that should undergo a complex folding processing before they achieve a quaternary structure that will allow their incorporation into the polymer. Due to the extremely high protein concentration that exists at the cell cytoplasm, there are alpha- and beta-tubulin interacting proteins that prevent the unwanted interaction of these polypeptides with the surrounding protein pool during folding, thus allowing microtubule dynamics. Several years ago, the development of a nondenaturing electrophoretic technique made it possible to identify different tubulin intermediate complexes during tubulin biogenesis in vitro. By these means, the cytosolic chaperonin containing TCP-1 (CCT or TriC) and prefoldin have been demonstrated to intervene through tubulin and actin folding. Various other cofactors also identified along the alpha- and beta-tubulin postchaperonin folding route are now known to have additional roles in tubulin biogenesis such as participating in the synthesis, transport, and storage of alpha- and beta-tubulin. The future characterization of the tubulin-binding sites to these proteins, and perhaps other still unknown proteins, will help in the development of chemicals that could interfere with tubulin folding and thus modulating microtubule dynamics. In this paper, current knowledge of the above postchaperonin folding cofactors, which are in fact chaperones involved in tubulin heterodimer quaternary structure achievement, will be reviewed.
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[
Trends in Cell Biology,
1996]
Keeling and Logsdon propose that the y-like sequences from Caenorhabditis elegans and Saccharomyces cerevisiae are bona fide y-tubulins that have undergone rapid evolutionary divergence. Indeed, genetic and localization studies with the yeast epsilon-tubulin (encoded by the TUB4 gene) reveal striking similarities to the bona fide y-tubulins, whereas there is no apparent human analogue to the C. elegans delta-tubulin among the 60 available human y-tubulin expressed-sequence tags. (ESTs).
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[
Research Resources Reporter (DHHS),
1986]
A comprehensive collection of the nematode Caenorhabditis elegans, including strains useful in research and in teaching genetics, is maintained at the Caenorhabditis Genetics Center at the University of Missouri in Columbia, Missouri.
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[
The Scientist,
1996]
Biologist H. Robert Horvitz discusses the genetics of cell death in the nematode C. elegans.
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[
Trends in Cell Biology,
1996]
Cellular microtubules assemble and disassemble at a variety of rates and frequencies, and these properties contribute directly to the cell-cycle-associated rearrangements of the microtubule cytoskeleton and to the molecular basis of mitosis. The kinetics of assembly/disassembly are governed, in part, by the hydrolysis of GTP bound to the B-tubulin nucleotide-binding site. The B-tubulin GTP-binding site, therefore, lies at the heart of microtubule assembly-disassembly kinetics, and the elucidation of its structure is central to an understanding of the cellular behaviour of microtubules. Unfortunately, the crystallographic structure of B-tubulin is not yet available. In this review, we describe the progress being made using mutagenesis and biochemical studies to understand the structure of this unusual GTP-binding site.
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Scientist,
2002]
In the dozen years from 1965 onward, Sydner Brenner laid the groundwork for making Caenorhabditis elegans a major system for genetics, neurobiology, and developmental biology research.
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Cell Motility and the Cytoskeleton,
1995]
The tubilin family has been considered to have two members, the a- and B-tubulins, which interact to form the heterodimers which in turn assemble to form the eukaryotic microtubules. A third member, y-tubulin, was identified in 1989 and has since been shown to be specifically localized in Microtubule Organizing Centers and has been implicated in the nucleation of microtubules in vivo. Comparisons of individual a-, B-, and y-tubulin sequences within the three subfamilies yield homologies of 65-100% identity. By contrast, comparisons between the three subfamilies typically yield homologies of only about 30-40% identity. The Caenorhabditis and yeast genome projects have recently identified two putative y-tubulin sequences. Analysis of these sequences, however, shows that they are significantly different from those of bona fide y-tubulins...
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Neuroscience,
1980]
Genetics in the study of less complicated organisms like bacteria has been a tremendously powerful way of recognizing individual elements hidden within a process, mutationally tagging them in ways easier to recognize by the biochemist. Identifying the elements used in the construction and function of nervous systems might be easier if genetics were readily applicable. The problem has been that the larger organisms with cells most suitable for impaling with microelectrodes and for obtaining isolated tissue for biochemical studies are the organisms most cumbersome genetically. Smaller, simpler organisms which can be raised rapidly and in the myriad quantity required for genetics usually lack the favorable attributes for study of the nervous system that come with size. One notable exception to this rule is the lowly, single-celled paramecium, which combines physiological accessibility with reasonably good genetics. But otherwise, for those interested in the genetics of multicellular nervous systems, it has been a matter of catch-as-catch-can. The attention of a few scientists has come to rest on the nematode, a worm not too many steps up the evolutionary