- WBPaper00061651:FLP_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in FLP according to single cell RNAseq.
- WBPaper00050225:flp-6(RNAi)_downregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly decreased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00040420:FLP_enriched
t-test ratio of fluorescence intensity >= 3.0, P < 0.01
Over-expressed genes in the FLP neuron cells isolated by fluorescent activated cell sorting (FACS).
- WBPaper00050225:flp-6(RNAi)_upregulated
Initially, differentially expressed genes were defined as FPKM R0.3 with a fold change R2 or %0.5. This resulted in 717 transcripts as differentially expressed in the flp-6 mutant. Authors therefore set a stringent criterion of FPKM R5, which reduced the number of differentially expressed transcripts to 239.
Transcripts that showed significantly increased expression in flp-6(RNAi) comparing to in control animals.
- WBPaper00061340:Ciliated_non_amphid_neuron
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in ADE, AQR, BAG, CEP, FLP, IL1 neuron, IL2 neuron, OLL, OLQ, PDE, PHA, PHB, PQR, PVR according to single cell RNAseq.
- WBPaper00061527:flp-5-F17C11.2
All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.
Coexpression clique No. 93, flp-5-F17C11.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.